Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1042 |
Symbol | |
ID | 1219851 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1097809 |
End bp | 1098468 |
Gene Length | 660 bp |
Protein Length | 219 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637237405 |
Product | putative phosphoglycolate phosphatase protein |
Protein accession | NP_519163 |
Protein GI | 17545761 |
COG category | [R] General function prediction only |
COG ID | [COG0546] Predicted phosphatases |
TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0803838 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGCAGC AGCGCTTTGA CCTGATCGTC TTCGACTGGG ACGGCACCCT GATGGATTCG ACGCCGGCTA TCACCCGGTC GATCCAGCTG GCGTGCCGCG ATCTCGGCCT GCCGGTGCCG GACGATGCGC ATGCCAGCCA CGTGATCGGC CTGGGTCTGC GCGATGCGCT CGAGTACGCG GTGCCGACGC TCGATCCGGC CGACTACGGC CGGCTGGCCG AGCGCTATCG CTTCCATTAT CTCAACCGGG ACGCGCAGCT GGTGCTGTTC CCGGGCGTGC GAGAGATGCT GGAGGCGCTG CGCAAGCAGC ACTACCTGCT GGCCGTGGCG ACCGGCAAAT CGCGCGTCGG TCTGCAGCGG GCACTCGAGA CGACCGGCCT GATCGGCGTG TTCGACGATA CGCGCTGCGC CGACGAGACC TTCTCCAAGC CCCATCCGGC CATGCTGCTG GAGCTGACCC GCGAGCTGGG CATGGACGTG GAGCGCACCG TGATGGTCGG CGACACCACG CACGATCTGC AGATGGCCGC CAACGCCGGG GCCGCCGGGG TGGCGGTCTC CTACGGCGCG CATCCGGCCG ATGTGCTGCA CGCGCTGGAC CCGCTGTTCT GTGCCGGATC GGTCACCGAA CTGCATCGCT GGCTGGCCGA CCATGCCTGA
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Protein sequence | MPQQRFDLIV FDWDGTLMDS TPAITRSIQL ACRDLGLPVP DDAHASHVIG LGLRDALEYA VPTLDPADYG RLAERYRFHY LNRDAQLVLF PGVREMLEAL RKQHYLLAVA TGKSRVGLQR ALETTGLIGV FDDTRCADET FSKPHPAMLL ELTRELGMDV ERTVMVGDTT HDLQMAANAG AAGVAVSYGA HPADVLHALD PLFCAGSVTE LHRWLADHA
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