Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1019 |
Symbol | nifS |
ID | 1219828 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1072986 |
End bp | 1074203 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637237382 |
Product | pyridoxal-phosphate-dependent aminotransferase (NIFS protein) |
Protein accession | NP_519140 |
Protein GI | 17545738 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1104] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes |
TIGRFAM ID | [TIGR02006] cysteine desulfurase IscS [TIGR03402] cysteine desulfurase NifS |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.103423 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.217288 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTACCC CACATCTCCC CATCTACATG GACTATTCCG CGACGACGCC GGTGGATCCG CGCGTGGTCG ACAAGATGAT TCCGTACCTG CGCGAGCAGT TCGGCAATCC GGCGTCGCGC AGCCACGCGT TCGGCTGGGA AGCGGAAAAG GCCGTCGAAA CCGCGCGGGA ACAGGTGGCG GCGCTGGTCA ATGCCGACCC GCGCGAGATC GTGTGGACGT CCGGCGCGAC CGAGTCCGAC AACCTGGCGC TCAAGGGTGC GGCCAACTTC TACGGCAGCA AGGGCAAGCA CATCATCACC GTCAAGACCG AGCACAAGGC CGTGCTCGAT ACGGCGCGCG AGTTGGAGCG CCAGGGCTTC GAGGTGACCT ACCTTGACGT GCAGGAAAAC GGCCTGATCG ACATCGAGCA GTTCAAGCAG GCGCTGCGCC CGGACACCAT CCTGGCCTCG GTGATGTCGG TCAACAACGA GATCGGCGTG ATCCAGGACA TCGAGCAGAT CGGCGAGATC TGCCGCGACA AGGGCGTCAT CTTCCACGTC GACGCCGCGC AGGCGACCGG CAAGGTGGAG CTCGACCTGC AGAAGCTGAA GGTCGACCTG ATGTCCTTCT CGGCGCACAA GACGTATGGC CCGAAGGGTA TCGGCGCGCT GTACGTGCGC CGCAAGCCGC GCATCCGCGT CGAAGCGCAG ATGCACGGCG GCGGCCACGA GCGCGGCATG CGCTCGGGCA CGCTGCCGAC GCACCAGATC GTCGGCATGG GCGAGGCCTT CCGCATCGCG CGTGAAGAAA TGGCCACCGA GAACGAGCGC ATCCGCATGC TGCGCGATCG CCTGCACCGC GGCCTGACCG CAATGGAAGA GGTCTACGTC AACGGCGACA TGGAGCGCCG CGTGCCGCAC AACCTCAACA TCAGCTTCAA CTTCGTCGAA GGCGAGTCGC TGATCATGGC GATCAAGGAT GTCGCCGTGT CGTCGGGCTC CGCGTGCACG TCGGCATCGC TGGAACCGTC CTACGTGCTG CGCGCCCTGG GCCGCAACGA CGAACTGGCC CACAGTTCGA TCCGCTTCAC GGTCGGCCGC TTCACCACCG AGCAGGAAGT CGACTACGTG GTCGAGCTGC TCAAGAGCAA GATCGGCAAG CTGCGCGACC TGTCCCCGCT GTGGGAGATG TACAAGGACG GCGTGGATCT GAACAGCATT CAATGGGCGG CGCACTGA
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Protein sequence | MSTPHLPIYM DYSATTPVDP RVVDKMIPYL REQFGNPASR SHAFGWEAEK AVETAREQVA ALVNADPREI VWTSGATESD NLALKGAANF YGSKGKHIIT VKTEHKAVLD TARELERQGF EVTYLDVQEN GLIDIEQFKQ ALRPDTILAS VMSVNNEIGV IQDIEQIGEI CRDKGVIFHV DAAQATGKVE LDLQKLKVDL MSFSAHKTYG PKGIGALYVR RKPRIRVEAQ MHGGGHERGM RSGTLPTHQI VGMGEAFRIA REEMATENER IRMLRDRLHR GLTAMEEVYV NGDMERRVPH NLNISFNFVE GESLIMAIKD VAVSSGSACT SASLEPSYVL RALGRNDELA HSSIRFTVGR FTTEQEVDYV VELLKSKIGK LRDLSPLWEM YKDGVDLNSI QWAAH
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