Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0977 |
Symbol | |
ID | 1219786 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1026874 |
End bp | 1027731 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637237340 |
Product | putative transglycosylase signal peptide protein |
Protein accession | NP_519098 |
Protein GI | 17545696 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.121304 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.131274 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCTGC TCCGACGCGC CGCGCTGCTC TGGATGGCCC TGGCCCTGCT GGCCGGCCAG CCGGCGCGCG CCGACGTCTA CGGCTACATC GACGAGAACG GCCTGGCGCA CTTCGCGGCC GAGCGGCTGG ATGACCGCTA TGTGCTGTTC ATGAAGGGCA CGGCGGTGGC CGGTGCGTCC GGCATTGCCC AGCCGGCCGG TGACCCGCCG GATGCCGATG CCGATCGGAA CGCCGCCGGG CGCGATGCGC CCGACAACGA CGGCATGCGC CGGCGCCTGG CGCGCGCGGT GCTGCAGCAT CCCAACGTGC CGAGGGTCGA GCCGCTGATC CGGCAGGCGG CGCGCAAGCA TGGCGTCGAC CCGGCGCTGG TGAAGGCGGT GATCGCGGCG GAGTCGGGCT TCAATCCGCA GGCGGTGTCG CCCAAGGGCG CGATCGGGCT GATGCAGGTC ATTCCCGAAA CCGGCGAGCG CTATGGCGTG ACCGGCGACG CGCGCCGCAC GCTCGCGCAG AAGCTGGCCG ACCCGAGGGT CAACATCGCC ACCGGTGTGC GCTACCTGAG CGATCTGCTG CGGATGTTCT CCGGCGATCT CGAACTGGCG CTGGCCGCCT ACAACGCCGG CGAGGGCGCG GTGCAGAAGC ACGGCAACGA CATCCCGCCC TATGCCGAGA CGCAGAACTA CGTGAAGACG GTGCTGCAGT TCTACCGGTA CTACAACCCC GTCACCGCCG CGCCGGGCCT GATGACGGTC AGCGCCGGCG GTGCCATGGC GACGACGCGC AAGCCCGGGC ATTCCGGACA TTCGGGCCGG CCGAGGCGCA TCGAACTGGT GCTGCCGGCC CCTTCACAAG AACATTGA
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Protein sequence | MKLLRRAALL WMALALLAGQ PARADVYGYI DENGLAHFAA ERLDDRYVLF MKGTAVAGAS GIAQPAGDPP DADADRNAAG RDAPDNDGMR RRLARAVLQH PNVPRVEPLI RQAARKHGVD PALVKAVIAA ESGFNPQAVS PKGAIGLMQV IPETGERYGV TGDARRTLAQ KLADPRVNIA TGVRYLSDLL RMFSGDLELA LAAYNAGEGA VQKHGNDIPP YAETQNYVKT VLQFYRYYNP VTAAPGLMTV SAGGAMATTR KPGHSGHSGR PRRIELVLPA PSQEH
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