| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0976 |
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| Symbol | parE |
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| ID | 1219785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1024879 |
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| End bp | 1026864 |
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| Gene Length | 1986 bp |
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| Protein Length | 661 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637237339 |
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| Product | DNA topoisomerase IV subunit B |
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| Protein accession | NP_519097 |
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| Protein GI | 17545695 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00669448 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.174537 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAAA CTCCCCAATA CAGCGAAGCG TCGATCAAGG TCCTGAAGGG CCTGGAACCG
GTCAAGCAGC GGCCGGGCAT GTACACGCGC ACCGACAATC CGCTGCACAT CGTGCAGGAA
GTGATCGACA ACGCCGCCGA CGAAGCGCTG GGCGGCTACG GCAAGTGGAT CCAGGTGACG
CTGCACAAGG ACGGCAGCGT GAGCGTGGAA GACGAGGCGC GCGGCATTCC GGTCGGCATC
CATCCGGAAG AGGGCGTGCC GGTGGTGGAG ATCGTCTTCA CCCGGCTGCA CGCGGGCGGC
AAGTTCGACA AGGGGCGCGG CGGCGCGTAT GCGTTCTCCG GCGGCCTGCA CGGCGTGGGC
GTCTCGGTCA CGAACGCGCT GTCGACGCGG CTGGAGGTGG CGGTCTGGCG TGACGGCAGC
GTCTCCACGC TGGCGTTCTC TGGCGGCGAT GTCATCGAGG CGCTGGCCAC CCGCCGCGCC
GAGCGCGGCG AGAAGAAGAA CGGCACGCGC GTGCGTGTCT GGCCGGACGG CAAGTATTTC
GATTCCGAGA ACATCCCGCA GGCCGAGCTG CAGCGGCTGC TGCGCAGCAA GGCGGTGCTG
CTGCCGGGCG TGAAGGTGTC GCTCACGATC GAGAAGAGCG GCGAGACGCT CGAATGGCAG
TACGACCAGG GCCTGCGCGG CTACCTGATC GAATCGCTGG CGCAGGGCAG CGGCGCCGAC
CCGGTGATCC CGCTGTTCGA GGGCGAGCAT TTCGCCGATC CCGACCGGCC CGGCGAAGAG
GGCTTCGCCT TCGGCGAGGG CGCATCGTGG GTGGTGGCCT GGACGGACGA GGGCTCGCCG
GTGCGCGAGT CCTACGTCAA CCTGATCCCG ACGCCGGCCG GCGGCACGCA CGAGTCCGGT
TTGCGCGAAG GCCTGTTCCA GGCGGTCAAG AGCTTCGTCG AGATGCACGC GCTGTGCCCC
AAGGGCGTCA AGCTGATGCC CGAAGACGTG TTCGCGCGCG CCTCGTTCGT GCTGTCGGCC
AAGGTGCTCG ATCCGCAGTT CCAGGGCCAG ATCAAGGAGC GCCTGAACAG CCGCGATGCG
GTGCGGCTGG TGTCCACCTT CAGCCGCCCG GCGCTGGAGC TGTGGCTGAA CCAGCACGTC
GAGTTCGGCA AGAAGCTGGC CGAACTGGTG ATCCGCCAGG CTCAGGCCCG CACGCGCGCG
GCGCAGAAGG TCGAGAAGAA GAAGGGCTCC GGCGTGGCCG TGCTGCCCGG CAAGCTGACC
GATTGCGAGT CGGACGATGT CTCCCGCAAC GAACTCTTCC TGGTGGAGGG CGATTCCGCC
GGCGGCTCGG CCAAGATGGG CCGCGACAAG GAATTCCAGG CCATCCTGCC GCTGCGCGGC
AAGGTGCTCA ACACGTGGGA GACCGAGCGC GACCGCCTGT TCGCCAACAA CGAGGTGCAC
GACATCGCGG TGGCCATCGG GGTGGACCCG CACGGTCCGG CCGACAGCGT GGACCTGTCC
GGCCTGCGCT ACGGCAAGAT CTGCATCCTG TCGGACGCCG ACGTGGACGG CGCGCACATC
CAGGTGCTGC TGCTGACGCT GTTCTTCAAG CATTTCCCGC AACTGATCGG GCGCGGCAAC
GTGTGCGTGG CGCGGCCGCC GCTGTATCGC GTCGATGCGC CGGCGCGCGG CAAGAAGCCG
GCGCAGAAGC TCTACGCGCT GGACGACGGC GAGCTCGAGG CCATCGAAGA CAAGCTGCGC
AAGGAAGGCC TCAAGGAAGG GTCCTGGCAG ATCTCCCGCT TCAAGGGCCT GGGCGAGATG
AGTGCCGAGC AGCTGTGGGA GACCACCATG AACCCCGACA CGCGGCGCCT GCTGCCGGTT
TCGATCGGCG AGCCCGGCGC GGAGCAGACT GTTCACGTGA TGAACATGCT GATGGGCAAG
GGCGAGGCCG GCGCGCGCCG CACGTGGCTG GAGGCGCGCG GCAACGAGGT CGAGGCCGAT
ATCTGA
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| Protein sequence | MSKTPQYSEA SIKVLKGLEP VKQRPGMYTR TDNPLHIVQE VIDNAADEAL GGYGKWIQVT
LHKDGSVSVE DEARGIPVGI HPEEGVPVVE IVFTRLHAGG KFDKGRGGAY AFSGGLHGVG
VSVTNALSTR LEVAVWRDGS VSTLAFSGGD VIEALATRRA ERGEKKNGTR VRVWPDGKYF
DSENIPQAEL QRLLRSKAVL LPGVKVSLTI EKSGETLEWQ YDQGLRGYLI ESLAQGSGAD
PVIPLFEGEH FADPDRPGEE GFAFGEGASW VVAWTDEGSP VRESYVNLIP TPAGGTHESG
LREGLFQAVK SFVEMHALCP KGVKLMPEDV FARASFVLSA KVLDPQFQGQ IKERLNSRDA
VRLVSTFSRP ALELWLNQHV EFGKKLAELV IRQAQARTRA AQKVEKKKGS GVAVLPGKLT
DCESDDVSRN ELFLVEGDSA GGSAKMGRDK EFQAILPLRG KVLNTWETER DRLFANNEVH
DIAVAIGVDP HGPADSVDLS GLRYGKICIL SDADVDGAHI QVLLLTLFFK HFPQLIGRGN
VCVARPPLYR VDAPARGKKP AQKLYALDDG ELEAIEDKLR KEGLKEGSWQ ISRFKGLGEM
SAEQLWETTM NPDTRRLLPV SIGEPGAEQT VHVMNMLMGK GEAGARRTWL EARGNEVEAD
I
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