Gene RSc0915 details

Gene Information

• Locus tag: RSc0915
• Symbol: rfaD
• ID: 1219723
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: +
• Start bp: 966945
• End bp: 967940
• Gene Length: 996 bp
• Protein Length: 331 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 637237277
• Product: ADP-L-glycero-D-manno-heptose-6-epimerase protein
• Protein accession: NP_519036
• Protein GI: 17545634
• COG category: [G] Carbohydrate transport and metabolism; [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0451] Nucleoside-diphosphate-sugar epimerases
• TIGRFAM ID: [TIGR02197] ADP-L-glycero-D-manno-heptose-6-epimerase

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACCATCA TCGTGACCGG CGCGGCCGGC TTCATCGGCG CCAACCTCGT CAAGGGCCTC 
AATGACCGCG GCGAGACCGA CATCATCGCG GTCGACAACC TGACCCGCGC CGACAAGTTC 
AGGAACCTGG TCGACTGCGA GATCAGCGAC TACCTGGACA AGACCGAGTT CGTCGAGCGC 
TTTGCGCGCG GCGACTTCGG CAAGGTCCGC GCGATCTTCC ACGAGGGCGC CTGCTCCGAC 
ACCATGGAGA CCGACGGCCG CTACATGATG GAGAACAACT ACCGGTACAC GCTCGCGCTG 
ATGAAGGCCT GCCTGGACCA GGGCGTGCAG TTCCTCTACG CGTCGTCGGC GGCCACCTAC 
GGCGCGTCGG ACACCTTCCG CGAGGACCGC GAGTTCGAGA AGCCGCTCAA CGTGTACGGC 
TACTCCAAGT TCCTGTTCGA CCAGATCGTG CGCCGCACGC TGCCGGGCGC GCTGTCGCAG 
ATCGTTGGCT TCCGCTATTT CAACGTCTAC GGCCCGCGCG AGCAGCACAA GGGGCGCATG 
GCGTCGGTGG CCTTCCACAA CTTCAACCAG TTCCGCACGG AAGGCACCGT CAAGCTGTTC 
GGCGAGTACA ACGGCTATCC GCAGGGTGGC CAGATGCGCG ACTTCGTGTC GGTGGAGGAC 
GTGGTCAAGG TCAACCTGTT CTTCTTCGAC CATCCGGACA AGTCGGGCAT CTTCAACCTC 
GGTACCGGCC GCGCCCAGCC GTTCAACGAC ATCGCGACCA CCGTGGTGAA CACCCTGCGC 
GAGGCCGAAG GCAAACCGGC GCTCTCGACC GAAGAGTTGG CGCAGGAAGG CCTGGTCGAA 
TACGTGAAAT TTCCCGATGC GCTGCGCGGC AAATACCAGT GCTTCACCCA GGCCGACCAG 
GGCAAGCTGC GCGCGGCTGG CTACAGCGCG CCGTTCCTGA CCGTGCAGGA AGGCGTGGCG 
CGCTACTGCC GCTGGCTGAT GGCCCAGCCG GCCTGA 

 

Protein sequence

MTIIVTGAAG FIGANLVKGL NDRGETDIIA VDNLTRADKF RNLVDCEISD YLDKTEFVER 
FARGDFGKVR AIFHEGACSD TMETDGRYMM ENNYRYTLAL MKACLDQGVQ FLYASSAATY 
GASDTFREDR EFEKPLNVYG YSKFLFDQIV RRTLPGALSQ IVGFRYFNVY GPREQHKGRM 
ASVAFHNFNQ FRTEGTVKLF GEYNGYPQGG QMRDFVSVED VVKVNLFFFD HPDKSGIFNL 
GTGRAQPFND IATTVVNTLR EAEGKPALST EELAQEGLVE YVKFPDALRG KYQCFTQADQ 
GKLRAAGYSA PFLTVQEGVA RYCRWLMAQP A