| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0900 |
|---|
| Symbol | |
|---|
| ID | 1219708 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 949379 |
|---|
| End bp | 950035 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637237262 |
|---|
| Product | signal peptide protein |
|---|
| Protein accession | NP_519021 |
|---|
| Protein GI | 17545619 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000937501 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.517414 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT TTACCAAGCT CGCGTTCGCT GCAGCTGCGG TAGCCATGGC TGCGTCCGCT
TACGCTCAGT CGGTGCCCTA CGAGAAGAAG GCCGTCAACG ACAACTGGGG TAACGGTACG
AGCGAGTGGG TCTGGAAGAA CGGCACGAAC GAACTCTGCT GGCGCAATGG TTTCTGGACG
CCGGCAACTG CCAATGTGCA GTGCGACGGC GCCCTGGCTC CGGCTGCCGC TCCGCAAGCA
CAACCGACCC CGGCCGCCAA GCCGGTCGTT GGCTCGGAGA AGGTCACGTT CGCGGCTGAC
GCCCTGTTCG ACTTCGACAA GGCTGTGCTG AAGCCCGAAG GCAAGTCCAA GCTGGACGAC
CTGGTCTCGA AGCTGAAGGG CATCACCCTG GAAGTCGTGA TCGCCGTGGG TCACACCGAC
TCGTTCGGTT CGGACAAGTA CAACGACCGC CTGTCGGTCC GCCGCGCCGA AGCCGTGAAG
GGCTACCTGG TGAGCAAGGG CATCGAAGCC AACCGCGTCT ACACGGAAGG CAAGGGCAAG
CGCCAGCTGA AGGTGGATCC GAAGTCCTGC AAGGGCGCAC GCAAGGCACA AATCGCCTGC
CAACAGCCGA ACCGCCGCGT GGAAGTCGAA GTGGTCGGTA CGCGCAGCGC GCAGTAA
|
|---|
| Protein sequence | MKKFTKLAFA AAAVAMAASA YAQSVPYEKK AVNDNWGNGT SEWVWKNGTN ELCWRNGFWT
PATANVQCDG ALAPAAAPQA QPTPAAKPVV GSEKVTFAAD ALFDFDKAVL KPEGKSKLDD
LVSKLKGITL EVVIAVGHTD SFGSDKYNDR LSVRRAEAVK GYLVSKGIEA NRVYTEGKGK
RQLKVDPKSC KGARKAQIAC QQPNRRVEVE VVGTRSAQ
|
|---|
| |