| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0873 |
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| Symbol | |
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| ID | 1219681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 905209 |
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| End bp | 909309 |
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| Gene Length | 4101 bp |
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| Protein Length | 1366 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637237235 |
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| Product | putative bacteriophage-related transmembrane protein |
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| Protein accession | NP_518994 |
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| Protein GI | 17545592 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5281] Phage-related minor tail protein |
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| TIGRFAM ID | [TIGR02675] tape measure domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00870949 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTCCCAAC GCATCTCCAT TCTTGTCGCC CTCGATGGTG CCGACGAGGG CCTCAAACGC
GCTATCACAT CGGCCGAGCG CAGCTTGGGA GAACTGGCAG CATCCGCCAA GACATCAGGC
GACAAGGCCG CGGCGGGCCT CGCCCAGGTC AAGGCGGGAG TGTCCGTCAT CGGCGAACAG
GTCACCGCAG CCAGGACCCA GGTGCTGGCT TTTCTGTCGA TCAACTGGGC CGCCGGCAAG
GTGCAGGAGA TCGTGCAGGT CGCCGACGCT TGGAACATGA TGGCCGCGCG CCTCAAGCTT
GCTACCGCCG GCCAGCGCGA ATTCACCGCC GCGCAGACCG CACTGTTCGA TATTGCTCAG
CGCATCGGCG TGCCGATTCA GGAGACCGCC ACGCTGTACG GCAAGTTGCA GCAGGCGGTG
CGCATGCTCG GCGGCGAGCA GCAGCAGGCG CTCACCATCA CGGAGAGCAT CTCGCAGGCG
CTGCGCATCT CCGGCGCCTC GGCCAACGAG ACGCAATCGG CGCTGCTGCA GTTCGGCCAG
GCACTGGCGG CAGGCGTGTT GCGCGGCGAG GAGTTCAACT CCGTTGTCGA GAACAGCCCC
CGCCTCGCAC AGGCCCTGGC CGATGGCCTC AACGTTCCGA TCGGCCGGCT GCGCAAGATG
GCCGAGGAGG GGCGGCTGAC GGCCGATGTA GTCGTCAATG CGCTGCTGTC CCAGAAGAGC
AAGCTCGCCA CCGAATACGC CCAGCTGCCG GCAACCGTCA GCCAGGCGTT CGAGCGGTTG
CGCAATGCGT TCGGGCAGTA CATCAACCGG ATCGACCAGG CCACCGGCTT CAGTGCCAAG
CTGTCCGAGG CACTGACGTG GCTCGCGCAG AACCTCGACA CGGTGATGCG CTGGCTCACG
CGCATCGCCG AAGTCGGGCT GGCGGTGCTC GTCTACCGGC TGATCCCTGC GCTGATCACT
GCGTGGCAGA CTGCAGGCGC CGCTGCCGTC ACCGCAGCCA GTGCTACCTC CGCCGCCTGG
GCGACCGCCA ACCTGTCGGT GTCGGCTGCC ATTGCCAGCG TGGGCATGCT CAGGACCGGT
TTCGCCACGC TGGGCGCGTT CCTCGTCGGC TGGGAGATCG GCACCTGGTT GTCGGAGAAG
TTCGAGACCG TGCGTCGCGC CGGCATCCTC ATGGTCGAGG TGCTGATCCG GTCGGTCGAG
GAGCTGCGCT TTCACTGGGA GGTGTTCGCC GCCATCTTCA CGTCCGACAC CATCGCCGAG
GCGACCCAGC GGCACCAGGC GCGGCTGGGC GACATGAACC GGATTTTCGC GCAGATGGTT
GCCGACGCCG GCCGGGGGAC CGACGCGGCC AAGGGCGCGA TGAACGCGGC AGCCGGTGCC
GCCGAGGAGA TCGCCAAGCG CCTGGAGGCG GTGCGCCAGG GCACGCAGGA GGCGGTGGGC
CGCGGCGCCG AGGCGGTCCA CACGGCCCTG GAGAAACTCA AGTCGCGGAT CGGCGAGGTC
GAGCAGGCGG TTTCCAAGGC GAGCTCCACG GTGAACGACG CCACCGCCAG GATGGCCGAG
GCGTACAAGG GGCTCACCTC CATCATCGAT GGCCACCTGC AGCGCCAGGT CGAGGCGGTC
AAGGCGCGCT ACCAGCAGGA ACTGTCGGCG CTGGAGCGCT CGGGCCAGGC GCAGGCGGTG
CAGATCGCCA CATCGACCCA ACTGCTGGTC GGGGCCCTCA CGCAGCAGAC GGCGTTGCGC
CAGCAGGCCG CGACCGAGGC GTTGAAGCTG ATCGATGACG AGTCCCGCGC CCGCGTCGAT
GCCGTGGCTC GCGAAGGCAA GACCGAGGCC GAGCGCGCAG CCAACGTGCA GCGGGTCGAG
AACGAGATTC TGGCCACCCG GCGGCAGACA CTGACCCAGG CGGCCTCCGA ATACCGCCAG
CACATCGACG CACTCAACGC CGAGGCCAAT CGGCACCTGA CCGAGATCCG GCGCATTGAG
GACGAGAAGC GGCAGCTGTC GATGTCGACC GAGGAGCGCA TCCGCGACAT TCGCCGCGCG
GGGCTATCGG ACTACGAGGC CCAGGAGGAC CGCAAGCGCC AGATCGCTGA GTACCAAGCC
AGTGCTCGTG CCGCATTGGC CGACGGTGAG TTCGACCAGG CCCGCCAGCG CGCCAGCAAG
GCCATGGACT TGGCCGCCCA GGTCGCCAGC GCACAGTCCG GCGAGGCCAA GCGTGCCGAG
GACGCACGCA AGCAGTCGGA AGCGGCGGTG ACGCAGGTGG CTCAGCTGGA AGCCCAGGCT
CGGGAGGCAA CCGGCCGCCG GGAGTATGCG CAGGCCGAAG CCCTGACACG GCAGGCGGAC
GAGCTGCGCG CCCGATCAGC ACAGCAGGCG GCGAACGCCG ACGCCCAGGC GGTGCGGGGC
AAGGCCGCTG TCAACGAAGC CATCGGCCGC ATCCGCGATT CGCAGGCGAT CCTCAATCAA
ACACTGGATG CGGAGGCCCA GGCGCACCAG CGCGCCGCGC AGTCGGCGGT ATCGGCCCGG
CAGGACATCC AGCAAACGCT GGCCCAGACC GACAGCCAGA TCGCCCAGCT GACGGCCAAG
CTGCAGCAGG GGCTCAAGGT CACCATCGAT GCGGACACTC AGCGCTTCGA CAAGGCCATC
GCCGACCTCG ACAAGGCACT GGTCGAGCGC GAGCGGTTGG TGGTCATCAA GGCGGATCTG
GAGCAGGCCG AGAAGACGCT GCAGGACTAC GAGCAGCGGC TCAAGGAAGG CAGGACCCTG
CCGGTCGATG CCGACGTGTC CAAGGCACTC GCCTCGCTGG ACAAGCTCAA CGCCTACGCC
CGAGAGAATT CACAGCTGGA GCTGCGCGTC GCCACCGAGA AGGCGCGTGC TGCGATCGCC
AACGTCGACA GCATGTTGCG GGCACTGGAC CGCGTGCAGA CCGAGTCGCG CCACCGTGTC
GCCAGCAATG TCGATGCGGT GCGCGTCGAG GTGCAGAGTC TGAATGGCAT GAATACGTCC
AGCACGCACA CCATTGCCGT GCGCCGGGTG GAGGCGAATG CCGCAGGCGG TGTGGTCGGC
GGCGGCGTGC AGCAGTTCGC CGAGGGCGGA CAGGTCGCGC CCGCCTTTCC GCGCATGACC
GGCGGTTCGG TGCCAGGCAC GGGCGACCAG GACACGGTGC CGCGCACGCT GGACGCCGGC
GCCTTCGTGA TCCGCAAGGC CGCCGTGCGC AAGTACGGCG CCGGGACGCT GGCGCAGCTA
GCCAACGGCG TGGCGCGCTT CGCCACCGGC GGGGCGGTGC TGTTCGGGGG ACGGGGTGGC
GGCCAGCCGG GCGGAGGCAA GCGCAATCGC GACGTGGTCG AGGCCCGCAA GATGATCGAC
CTCGGCCTGC AGGGCATGGG CGACTACGCC TCCTGGGCGC AGCACCAGGG CGGCGCCTGG
GTCAGTTCGG ACATGCGCTC GCGCACGATG ACGAACTATG GCCGGCAGGC CGAGCGTGAC
CGGCAGTCGC TCGATGCGCT GGCCGAGCGC AAGCAGCTGA CCACCGCCGA GCGGCAGACG
CTGGAGCGGA TCAAGACGAC CTGGCGCCAG GCCATGGCCC AGCCGATGCT GTGGGGCAAG
GATTTGGAGC GCGACCTGCT CGACTACATG GAGCAGTACC AGGGCGAGTT CTATCGGGAC
GGCGGCGTGG CACCTTCCGA CACGGTGCCC GCCATGCTGA CGCCCGGCGA GTACGTGGTG
AACCGGCAGG CGGTGGAGCG CCACGGCGTG GCCTTCTTCG ATGCCATCAA CAACCTGGCG
CTGCCGGCGC GCGCGCTGGC GAGCACAGTC CGGGGCTACG CCACCGGCGG GCTCGTCCAG
CCGCTGGCGG GGATGGCAGC CCGGGCGTCG CAAGCGGTGT CTGGTGCCTG GAAAGGGGCG
GATCCTGCGG CGGCGCTGTC GCAGGTGCTG GCCACCTCCA TGCGTGCGCC GGTGCCCGCC
TACGCGGCAG AGGTGGCGCC GGCCCGCACC ATCCGTGTGG AACTGGCCTC CGGCGGCCGG
ACGGTCGCCG CCACCATCGA TGCCCGCGAT GAAGCGCGGC TACTCGAACT TCTCAAAGAA
GCCCAATCCC GGGCGCTGTA A
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| Protein sequence | MSQRISILVA LDGADEGLKR AITSAERSLG ELAASAKTSG DKAAAGLAQV KAGVSVIGEQ
VTAARTQVLA FLSINWAAGK VQEIVQVADA WNMMAARLKL ATAGQREFTA AQTALFDIAQ
RIGVPIQETA TLYGKLQQAV RMLGGEQQQA LTITESISQA LRISGASANE TQSALLQFGQ
ALAAGVLRGE EFNSVVENSP RLAQALADGL NVPIGRLRKM AEEGRLTADV VVNALLSQKS
KLATEYAQLP ATVSQAFERL RNAFGQYINR IDQATGFSAK LSEALTWLAQ NLDTVMRWLT
RIAEVGLAVL VYRLIPALIT AWQTAGAAAV TAASATSAAW ATANLSVSAA IASVGMLRTG
FATLGAFLVG WEIGTWLSEK FETVRRAGIL MVEVLIRSVE ELRFHWEVFA AIFTSDTIAE
ATQRHQARLG DMNRIFAQMV ADAGRGTDAA KGAMNAAAGA AEEIAKRLEA VRQGTQEAVG
RGAEAVHTAL EKLKSRIGEV EQAVSKASST VNDATARMAE AYKGLTSIID GHLQRQVEAV
KARYQQELSA LERSGQAQAV QIATSTQLLV GALTQQTALR QQAATEALKL IDDESRARVD
AVAREGKTEA ERAANVQRVE NEILATRRQT LTQAASEYRQ HIDALNAEAN RHLTEIRRIE
DEKRQLSMST EERIRDIRRA GLSDYEAQED RKRQIAEYQA SARAALADGE FDQARQRASK
AMDLAAQVAS AQSGEAKRAE DARKQSEAAV TQVAQLEAQA REATGRREYA QAEALTRQAD
ELRARSAQQA ANADAQAVRG KAAVNEAIGR IRDSQAILNQ TLDAEAQAHQ RAAQSAVSAR
QDIQQTLAQT DSQIAQLTAK LQQGLKVTID ADTQRFDKAI ADLDKALVER ERLVVIKADL
EQAEKTLQDY EQRLKEGRTL PVDADVSKAL ASLDKLNAYA RENSQLELRV ATEKARAAIA
NVDSMLRALD RVQTESRHRV ASNVDAVRVE VQSLNGMNTS STHTIAVRRV EANAAGGVVG
GGVQQFAEGG QVAPAFPRMT GGSVPGTGDQ DTVPRTLDAG AFVIRKAAVR KYGAGTLAQL
ANGVARFATG GAVLFGGRGG GQPGGGKRNR DVVEARKMID LGLQGMGDYA SWAQHQGGAW
VSSDMRSRTM TNYGRQAERD RQSLDALAER KQLTTAERQT LERIKTTWRQ AMAQPMLWGK
DLERDLLDYM EQYQGEFYRD GGVAPSDTVP AMLTPGEYVV NRQAVERHGV AFFDAINNLA
LPARALASTV RGYATGGLVQ PLAGMAARAS QAVSGAWKGA DPAAALSQVL ATSMRAPVPA
YAAEVAPART IRVELASGGR TVAATIDARD EARLLELLKE AQSRAL
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