Gene RSc0695 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc0695 
Symbol 
ID1219500 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp743805 
End bp745259 
Gene Length1455 bp 
Protein Length484 aa 
Translation table11 
GC content70% 
IMG OID637237054 
Productporin (omp) ABC transporter protein 
Protein accessionNP_518816 
Protein GI17545414 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0288188 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGTTG CTCGCAGTAG CCGTGCGCGG ATGGCCGCGC GCGGTTCGCT TATTGTGTTG 
TGCTGGTCGA TGGCGCCGAT GCTGGCCTGG GCCCAGGCCG ATGCGCCGAC GACCGACCTG
CTGTCGGCCT ACCGCGCCGC GCTCGCCAAT GATCCGCAAT TTGCTGCCGC GCGCGCGCAA
TCCGTCGCGC AGCACGAGAA GCTGACGCAG GGCCGCTCCG GCCTGCTGCC GCAGATCGGC
GCCGCCTGGA GTTCGACGCG CATCATCTTC GATCAGACCG CGCCTGCCGA ATTCAACAAG
ACCTTCTCGT CGACAGGCTG GACGCTATCG CTGTCGCAGC CGCTGTTCCG CTGGGACCGC
TGGGAAACCT ACAAGCAGGG CGAGATCGCC GCCGCCGCCT CGGAAGCCAG CCTGGCGCAG
GCGCAGCAGG ACCTGATCAC GCGCACGGCG CAGACTTACT TCGACGCGCT CAACGCCCAG
GACACGCTGC AGTTGGTCCT TGCGCAGCGC GATGCCATCC AGCAGCAGTA CGAGCAGGCA
CGCCGCAACT TCGATGTCGG CAACGCCAAC ATCACCGACG CCAACGATGC CCAGGCCCGG
CGCGATGCGA TCGACGCCAC CGTCATCGCC GCCCGCAGCG ACTTCGAGGT CAAGCAGTCC
GCGCTCAGGC AGATCACCGG CGAGCCGGTC GGCAAGCTGG CGGGCGTGCG CACGGGGGTC
GCGTTGCCGC AGCCCGAGCC TGCTGCGCCG GAACGCTGGG TGGAACAGGC CCGCGGCAGC
AACCCGCAGG TGGCGCTGGC CCAGTACAAC CTGCAGAACG CCGAGCACGA CGTGAAGAAG
GCCTCGGCCG GGCACCTGCC CTCCGTCGAC CTGGTCGCGC AGACCGGCCA CACCAACGCC
AGCGGCAACC AGTACCTGCC GTCCCTGCCG GGCGGCGCGC GCTTCGACAG CTCGCAGATC
GGCGTGCAGG TCTCGATTCC CCTCTATGCG GGCGGTGCGA TCCAGTCACG CGTGCGCGAG
AGCATCGCGC TGGAAACCGA GGCCGCGAGC GACCTCGAGT ACGCCCGCCG TACCGTCGAG
CAGGGCGCGC GGCAAGCCTA TATCGGCGTG ATCGCGGGGC TCGCGCAGGT GAAAGCGCTG
GAAGCGGCCG AGGTATCGGC GCGCACGGCC TATGATTCGA ACCAGCTCGC CTACGGCGTG
GGGGTGCGCA TCGGCACCGA CGTGCTCAAC GCGCAGGCAC AGCTGTTCTC GGCCCGGCGC
GATCTGGCAC GCGCGCGCTA CGACACCATC GTCAATGGCC TGCGCCTGAA ATCCGCCGCC
GGCTCGCTGA GCGAGGCGGA CATGGTGCAG GTCAACACGC TGCTGACCGC CAACGCCTCG
GAAGATCTGA CCGCCCTGCC CCGGCCGGCG GCACGGGCCA AGCCCGCCGC CCCGGCCGCC
AACGCCAAGC GCTGA
 
Protein sequence
MTVARSSRAR MAARGSLIVL CWSMAPMLAW AQADAPTTDL LSAYRAALAN DPQFAAARAQ 
SVAQHEKLTQ GRSGLLPQIG AAWSSTRIIF DQTAPAEFNK TFSSTGWTLS LSQPLFRWDR
WETYKQGEIA AAASEASLAQ AQQDLITRTA QTYFDALNAQ DTLQLVLAQR DAIQQQYEQA
RRNFDVGNAN ITDANDAQAR RDAIDATVIA ARSDFEVKQS ALRQITGEPV GKLAGVRTGV
ALPQPEPAAP ERWVEQARGS NPQVALAQYN LQNAEHDVKK ASAGHLPSVD LVAQTGHTNA
SGNQYLPSLP GGARFDSSQI GVQVSIPLYA GGAIQSRVRE SIALETEAAS DLEYARRTVE
QGARQAYIGV IAGLAQVKAL EAAEVSARTA YDSNQLAYGV GVRIGTDVLN AQAQLFSARR
DLARARYDTI VNGLRLKSAA GSLSEADMVQ VNTLLTANAS EDLTALPRPA ARAKPAAPAA
NAKR