| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0606 |
|---|
| Symbol | |
|---|
| ID | 1219411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 652660 |
|---|
| End bp | 654513 |
|---|
| Gene Length | 1854 bp |
|---|
| Protein Length | 617 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637236965 |
|---|
| Product | putative methyl-accepting chemotaxis transmembrane protein |
|---|
| Protein accession | NP_518727 |
|---|
| Protein GI | 17545325 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.535208 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.212062 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTGATC CGGCTGCGTG CAGTGCGCTC TACATGGCAG GAACCCATAC CGTGCTCAAC
TCCATCCGTA CCCGCATCTT GCTGACCTGC GTCGCCATCG TGGTGGGCGC ATTGACCCTC
GCCGGTGGCC TCAACTACGT CGTCACCCGC TCCTACAACG ACGACGCGAT CCGCCAGAAC
CTGCAGTCCG TCGCACGCGG CCATATCGCC GGCATCGATG ACTGGGTGGC GTCCAAGACC
CAGATGGTGG TCGCGCTGCA GGATGCGGCG CTGTCGGCCG ATCCGGTGCC GGCCCTCAAG
ACGGTGGCCG CGTCGGGCGG CTTCATCAGC GTGTATGTCG GCTACCCCGA CAAGTCGTAC
AAGTTCGCCG ACCCGAGCGG GGTTCCACCC ACCTACGATC CGACCGCGCG CCCCTGGTAC
AAGCAGGCCG CGGAGGCCGG CAAGCCGGTG GTGACGCCGC CCTACGTCAG TGCCAGCACC
GGCAAGCTGG TGGTCACGTT CGCCGTGCCC ATCCTGCGCG ACGGCGGCCT GAAGGGCGTG
GTCGCCAGCG ATGTGTCGAT GGACGCCGTG ATCGCCAACG TCAAGGCCAT TCACCCGACG
CCGGCCAGCT TCGGCTTCCT GGTCAACGCC GCCGGCAAGA TCGTCGCCCA TCCCGATGAC
AAATTCACGC TCAAGCCGGT CACCGACCTG TCGGCCGACC TGAGCGACGC GACCCTCGCC
GCGCTTGCGC AGACCGACAA GCCGTTGCAG GTCAATGTGG GCGGCGCCGC CAAGCTGCTT
CATCGCCAGG GCGTGCAGGG CACCGACTGG GGCCTGGTGG TGGCGCTCGA CAAGTCCGAC
GCGACCGCCG GCATGCGTTC GCTGGTGACC ACGTCGATCG GCGTGCTGGT GGTGGTGGCG
CTGGTGGCGG CCGCCATCGT CGGCGCGATG ACGGCGCGCG CGTTCCGCCG CCTGTCGATG
ATCCGCGACG CGATGGACGA CATCGGCTCC GGCAGCGGTG ACCTCACCAA GCGCCTGCCC
GCCGACGGCC AGGACGAAGT CGCGCAGATC GCCCGCTCGT TCAATGCCTT CGCCGACAAG
CTGACCGCGG TGCTGCAGCA GATCCGCCTG GGCAGCGACT CGGTGCGCTC GGCCGCGCAG
GAGATCGCCG CCGGCAACGC CGATCTGTCG CAGCGCACCG AAGAGCAGGC CAGCTCGCTG
GAGGAGACCG CCTCCAGCAT GGAAGAGCTG ACCAGCATCG TGAAGCAGAA CGCCGACAAT
GCGCGCCAGG CCAGCTCGCT GGCGGTCAAC GCCTCCGACG TGGCGACGCG CGGCGGCAGC
GTGGTCGGCC AGGTGGTCCA GACCATGGGC GGCATCAACG AGAGCAGCAA GAAGATCGCC
GACATCATCG GCGTGATCGA GAGCATCGCG TTCCAGACCA ACATCCTCGC GCTCAACGCC
GCCGTGGAAG CGGCGCGCGC GGGCGAGCAG GGCCGCGGCT TCGCGGTGGT GGCGAGCGAG
GTGCGCAGCC TGGCGCAGCG CTCGGCGGGC GCGGCCAAGG AGATCAAGGC GCTGATCCAC
GACTCGGTCG ATCGTGTCTC CAACGGCACC GCGCTGGTGG ACCAGGCCGG CGTGACCATG
GCCGAGATCG TCGAGGCCGT GAAGCGCGTG ACCGACATCA TGGGCGAGAT CTCCGCCGCG
TCGGAAGAGC AGAGCAGCGG CATCGAGCAG GTCAACCAGG CCGTCAACCA GATGGATCAG
GTGACCCAGC AGAACGCAGC GCTGGTCGAG CAGGCCGCCG CCGCGGCGGA ATCGCTGGAA
GAGCAGGCGC GCAACCTGAA CGACGCGGTC GGCTCGTTCC GCCTGTCGCA CTGA
|
|---|
| Protein sequence | MADPAACSAL YMAGTHTVLN SIRTRILLTC VAIVVGALTL AGGLNYVVTR SYNDDAIRQN
LQSVARGHIA GIDDWVASKT QMVVALQDAA LSADPVPALK TVAASGGFIS VYVGYPDKSY
KFADPSGVPP TYDPTARPWY KQAAEAGKPV VTPPYVSAST GKLVVTFAVP ILRDGGLKGV
VASDVSMDAV IANVKAIHPT PASFGFLVNA AGKIVAHPDD KFTLKPVTDL SADLSDATLA
ALAQTDKPLQ VNVGGAAKLL HRQGVQGTDW GLVVALDKSD ATAGMRSLVT TSIGVLVVVA
LVAAAIVGAM TARAFRRLSM IRDAMDDIGS GSGDLTKRLP ADGQDEVAQI ARSFNAFADK
LTAVLQQIRL GSDSVRSAAQ EIAAGNADLS QRTEEQASSL EETASSMEEL TSIVKQNADN
ARQASSLAVN ASDVATRGGS VVGQVVQTMG GINESSKKIA DIIGVIESIA FQTNILALNA
AVEAARAGEQ GRGFAVVASE VRSLAQRSAG AAKEIKALIH DSVDRVSNGT ALVDQAGVTM
AEIVEAVKRV TDIMGEISAA SEEQSSGIEQ VNQAVNQMDQ VTQQNAALVE QAAAAAESLE
EQARNLNDAV GSFRLSH
|
|---|
| |