| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0539 |
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| Symbol | rhlE1 |
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| ID | 1219343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 582836 |
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| End bp | 584458 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637236897 |
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| Product | ATP-dependent RNA helicase protein |
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| Protein accession | NP_518660 |
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| Protein GI | 17545258 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00876522 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.882809 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGTTTT CCGAACTCGG CTTGTCAGAC AAGCTGGTAC GTGCCGTTGC CGAACTCGGC
TACGCAGAAC CCACCCCGAT TCAACGCCAG GCCATCCCCG CGATCCTCAA GGGCGGTGAC
CTGCTTGCCG GTGCACAGAC CGGCACCGGC AAGACCGCCG GCTTCACATT GCCGCTGCTG
CATCGCCTGT CCGCTGTGCA GCCCAACAAG GTGCAGACGC CCCACGGCAT GCGCTATCCC
ATCCGTGCGC TGGTGCTCAC ACCCACGCGC GAGCTCGCCG CGCAGGTGGA AGAGAGCGTG
CGCGCCTACG GCAAGTACCT GCCGCTGAAG TCGATGGTGA TGTTCGGCGG CGTCGGCATC
AATCCGCAGA TCGATGCGCT CAAGCGCGGC GTCGATATCG TCGTGGCCAC GCCGGGCCGT
CTGCTGGACC ACGTCGGCCA GCGCACCATC GATCTGTCGC ACATCGAACT GCTGGTGCTG
GACGAAGCCG ACCGCATGCT GGACATGGGC TTCATCCACG ACATCCGCAA GATCCTCAAC
ATCCTGCCGC CCAAGCGCCA GAACCTGCTG TTCTCGGCGA CGTTCTCGGA TGATATTCGC
GCGCTGGCCG ACCGCCTGCT GGATCAGCCC GCGCTGATCG AAGTCGCGCG CCGCAACACC
ACTGCCGAGA CGGTCGAACA GCGCATCTAC CCGGTCGACC GCGAACGCAA GCGCGAACTG
CTCGCCAAGC TCGTGAGCGA CAACGACTGG CACCAGGTGC TGGTCTTCAC GCGCACCAAG
CACGGCGCCA ACCGCCTGGC CGAGCAGCTC ACGCGCGACG GCATCCCGGC GCTGGCCATC
CACGGCAACA AGAGCCAGTC GGCGCGCACG CGGGCGCTGT CGGAGTTCAA GGCCGGGACG
CTGCGCGTGC TGGTCGCCAC CGACATCGCC GCACGCGGCA TCGATATCGA CCAACTGCCG
CACGTGGTCA ACTTCGACCT GCCCAACGTG CCGGAAGACT ATGTGCACCG CATCGGCCGC
ACCGGCCGCG CGGGCGCGCA GGGCGAGGCG ATCTCGCTGG TGTGCGTGGA CGAGCATGGC
CTGCTGCGCG ACATCGAGCG CCTGATCAAG CGCGAACTGC CGCGCACCGT CCTGGCGGGC
TTCGAGCCGG ACCCGACCAT CGCGCCGGAG CCGATTCCGA ACGGCCGCAA CAGTGCCCGT
GCGCCGCGCC AGGGTGGCGG TCGCAGTCAG CCGCCGCGCC AGGCCGCGGG CAACGCCGCG
CCGCGCGAGC CTCGTGCGCC GCGTGAGCCG CGCCGCGAGT CGGGCGCCAG CGGTCAGGGT
CAAGGGCAGG GTCAGGGCCA AGGCCGCAAT GGCGGCGGCC GCCAGCGTCA GGCACAAGGC
CAGCGCGATG GCCAAGCCGC GCCGAAGCCG CGCGGCGGTC AGGGCAGCGG TAACGGCAAC
GGCCAATCGC ATGCGCGCGG CCAGCGCCAG GGCAACGGCC AAGGCAACGG GCAGGGCGGC
CAGCGCCGTG CGTCCAACAC GCAAGCCGCG CAGCCGACCA AGGTGGCGCA GCCCGCACCC
AAGCAGCCGT TCAACGGCCT GTTTGCCAAG GCAGCGGCAC TGCTCGGCGG CCGCAAGGCC
TGA
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| Protein sequence | MSFSELGLSD KLVRAVAELG YAEPTPIQRQ AIPAILKGGD LLAGAQTGTG KTAGFTLPLL
HRLSAVQPNK VQTPHGMRYP IRALVLTPTR ELAAQVEESV RAYGKYLPLK SMVMFGGVGI
NPQIDALKRG VDIVVATPGR LLDHVGQRTI DLSHIELLVL DEADRMLDMG FIHDIRKILN
ILPPKRQNLL FSATFSDDIR ALADRLLDQP ALIEVARRNT TAETVEQRIY PVDRERKREL
LAKLVSDNDW HQVLVFTRTK HGANRLAEQL TRDGIPALAI HGNKSQSART RALSEFKAGT
LRVLVATDIA ARGIDIDQLP HVVNFDLPNV PEDYVHRIGR TGRAGAQGEA ISLVCVDEHG
LLRDIERLIK RELPRTVLAG FEPDPTIAPE PIPNGRNSAR APRQGGGRSQ PPRQAAGNAA
PREPRAPREP RRESGASGQG QGQGQGQGRN GGGRQRQAQG QRDGQAAPKP RGGQGSGNGN
GQSHARGQRQ GNGQGNGQGG QRRASNTQAA QPTKVAQPAP KQPFNGLFAK AAALLGGRKA
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