Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0473 |
Symbol | |
ID | 1219277 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 505405 |
End bp | 507192 |
Gene Length | 1788 bp |
Protein Length | 595 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637236831 |
Product | putative acyl-CoA dehydrogenase oxidoreductase protein |
Protein accession | NP_518594 |
Protein GI | 17545192 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.390432 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGTCAAT ACACCGCACC GTTGCGCGAT ATGCAGTTCG TCCTTCATGA GCTTCTCGAT GTCGAGGGGC ATCTGAAGGC GATGCCGGCG CATGCGGAGA TCGACGCCGA TACCATCAAC CAGGTGATCG AAGAAGCCGG CAAGTTCTGC TCGGAAGTCA TCTTCCCGCT CAACCAGTCG GGCGATCGCG AGGGCTGCAC CTACCACGGC GACGGCGTCG TGACGGCCCC CAAGGGCTTC AAGGAAGCGT ACAAGCAATA CGTCGAAGGC GGCTGGCCGG CGCTGGGCTG CGATCCGGAA TTCGGCGGCC AGGGCCTGCC GATCCTGGTC AACAACGCCG TCTACGAGAT GCTGAACTCG GCCAACCAGG CGTGGACGAT GTACCCCGGC CTGTCGCACG GCGCCTACGA GGCCCTGCAC GCGCACGGCA CGGATGAACT CAAGCAGCGC TACCTGCCCA AGCTGGTGTC GGGCGAGTGG ACCGGCACGA TGTGCCTGAC CGAGCCGCAT TGCGGCACCG ACCTCGGCAT CCTGCGCACC AGGGCCGAGC CGCTGGCCGA CGGCGCGTAC GCCATCACCG GCACGAAGAT CTTCATCTCG GCGGGCGAGC ACGACCTGTC GGACAACATC ATCCACCTGG TGCTGGCCCG CCTGCCGGAT GCGCCGGCCG GCACCAAGGG CATCTCGCTG TTCGTGGTGC CGAAGTTCAT CCCCGATGCC GCCGGCAACC CGGGCGAGCG CAACGGCGTG AAGTGCGGCT CCATCGAGCA CAAGATGGGC ATCCACGGCA ACGCCACCTG CGTGATCAAC CTGGACGGCG CGCGCGGCTG GATGGTCGGC GAGCCGAACA AGGGCCTGAA CGCCATGTTC GTGATGATGA ACGCCGCCCG CCTGGGCGTC GGCATGCAGG GCCTGGGCCT GACGGAAGTG GCCTACCAGA ACTCGGCGGC CTACGCCAAG GAGCGCCTGC AGATGCGCAG CCTCTCCGGC CCGAAGGCGC CGGACAAGCC GGCCGACCCC ATCATCGTGC ACCCGGATGT GCGCCGCATG CTGCTGACCC AGCGCGCCTA CGCCGAGGGC GGCCGCGCCT TCGCCTACTG GATCGCGCTG CAGATCGACC GCGAGCTGTC GCACCCGGAC GAATCGGTGC GCAAGGAGGC CGCCGATCTC GTCGCGCTGC TCACGCCCGT CATCAAGGCC TTCCTGACCG ACAACGCCTT CACCGCCACC AACGAGGGCA TGCAGGTGTT CGGCGGCCAC GGCTATATTG CCGAGTGGGG CATGGAGCAG TACGTGCGCG ATGCCCGCAT CAACATGATC TACGAAGGCA CGAACACTGT GCAGTCGCTG GACCTGCTGG GCCGCAAGAT CCTGGGCGAC ATGGGCGCCA AGATGAAGAA GTTCGGCAAG ATCGTGCAGG ACTTCGTCGA GGCCGAAGGC ACCAATGAGG CCATGCAGGA ATTCGTCAAC CCGCTGGCCG ACATCGGCGA CAAGGTCCAG AAGCTGACCA TGGAGATCGG CATGAAGGCG ATGGCGAACC CGGATGAAGT CGGCGCCGCC GCCGTGCCGT ACCTGCGCGT GGTCGGTCAC CTGGTGTTCG CCTACTTCTG GGCCCGCATG GCCAAGCTCG CGCTGGACAA GCAGGGCAAC GGCGACACCT TCTACAAGGC CAAGCTGGCG ACGGCGCGCT TCTACTTCGC CAAGCTGCTG CCCGAGACGG CGTACCAGAT CCGCGCCGCG CGCACGGGCG TCAAGCCGCT GATGGACCTC GAAGCCGAGC TGTTCTGA
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Protein sequence | MGQYTAPLRD MQFVLHELLD VEGHLKAMPA HAEIDADTIN QVIEEAGKFC SEVIFPLNQS GDREGCTYHG DGVVTAPKGF KEAYKQYVEG GWPALGCDPE FGGQGLPILV NNAVYEMLNS ANQAWTMYPG LSHGAYEALH AHGTDELKQR YLPKLVSGEW TGTMCLTEPH CGTDLGILRT RAEPLADGAY AITGTKIFIS AGEHDLSDNI IHLVLARLPD APAGTKGISL FVVPKFIPDA AGNPGERNGV KCGSIEHKMG IHGNATCVIN LDGARGWMVG EPNKGLNAMF VMMNAARLGV GMQGLGLTEV AYQNSAAYAK ERLQMRSLSG PKAPDKPADP IIVHPDVRRM LLTQRAYAEG GRAFAYWIAL QIDRELSHPD ESVRKEAADL VALLTPVIKA FLTDNAFTAT NEGMQVFGGH GYIAEWGMEQ YVRDARINMI YEGTNTVQSL DLLGRKILGD MGAKMKKFGK IVQDFVEAEG TNEAMQEFVN PLADIGDKVQ KLTMEIGMKA MANPDEVGAA AVPYLRVVGH LVFAYFWARM AKLALDKQGN GDTFYKAKLA TARFYFAKLL PETAYQIRAA RTGVKPLMDL EAELF
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