Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0397 |
Symbol | lolB |
ID | 1219201 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 424067 |
End bp | 424696 |
Gene Length | 630 bp |
Protein Length | 209 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 637236755 |
Product | outer membrane lipoprotein LolB |
Protein accession | NP_518518 |
Protein GI | 17545116 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3017] Outer membrane lipoprotein involved in outer membrane biogenesis |
TIGRFAM ID | [TIGR00548] outer membrane lipoprotein LolB |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000178523 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGACCG TGTTTTCGCG AGCGCTCGGC GCGCTGGTGC TGGGTGTTGC GTGCGCGCTG CTTGCAGGCT GCGCCAGCGT ACGGCCGGCC AACGACCTCT TCGCCGGCAC GCAAGACGGC GACGCCACCA TCACGCGCTA CCAGGGCCGC TTTTCGGCGC GCTACGTGCA GGACGACGCG CAGCAGAGCG CGGTTGGCAG CTTCCTGTGG CGCGAACGGG GGGCGGACGT GCAGCTGGAG CTGATGTCGC CGCTGGGCCA GACGCTCGCC ATCGTCAGCC AGAACCGGCA GGGCGCCACC CTGGAACTGC CTAACCAGCC GCCGCGCCGC GCCGCCGAAG TGGATACGCT GATGCAGGAC GCGCTCGGCT TCTCGCTGCC GGTCTCCGGC CTGCGCGACT GGCTGCGCGC GCGCCCCACG CCCGGCACGC CGGCCCGCGT GGCGCGCGAC GCGCAATCGC GCCCCGAGAC CATTGAGCAG AACGGGTGGA CGGTGCACTA CGTCGCCTGG AGCGACGATG GCGACAACAG CACCGCCAAT GCCCGCGTAC GCCGGCTGGA TCTCGACCGG CCCCAGGGCG CGGGCGGCGC GCCGGGCCCG CTGTCCGTGC GCCTCGTGCT CGACCAGTAA
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Protein sequence | MATVFSRALG ALVLGVACAL LAGCASVRPA NDLFAGTQDG DATITRYQGR FSARYVQDDA QQSAVGSFLW RERGADVQLE LMSPLGQTLA IVSQNRQGAT LELPNQPPRR AAEVDTLMQD ALGFSLPVSG LRDWLRARPT PGTPARVARD AQSRPETIEQ NGWTVHYVAW SDDGDNSTAN ARVRRLDLDR PQGAGGAPGP LSVRLVLDQ
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