| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0117 |
|---|
| Symbol | |
|---|
| ID | 1218920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 140009 |
|---|
| End bp | 140542 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637236474 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_518238 |
|---|
| Protein GI | 17544836 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4675] Microcystin-dependent protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.676106 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.412841 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACCCT TCATCGGCGA GATTCGCCTG TTTGCCGGCA ACTATGCCCC GCAGGGCTGG
CTGCTGTGCC AAGGCCAACT GATCGACATT TCCAGCAACG AGATCCTCTA CGCGCTGCTC
GGCACCACCT ACGGCGGCGA CGGCCGGACA ACGTTCGCGC TGCCCAACCT GCAGGGCGCG
CTGCCGGTCG GCCAGGGACA GGGCCCCGGC TTGACCGCCC GCACCATCGG CCAGCACCTG
GGCGTGGAAA ACGTGACGCT CACCCAGGCC CAGATGCCGG CGCACAGCCA CGCCCTGTTC
GCGACCAGCG ATACGGCGAC CACCATCACG CCGGGCCCCG GCGCGATGCT CGCCACCGTG
CCGAATCCGC AGGGCTTCTA CGATGCCGGT ACGGCCAATC CGCCGACCAA GGCGGCGTTT
TCCAGCCAGG CCGTCGGCGT GGCCGGCGCC AACCTGCCGC ACTCGAACCA CATGCCGACC
GCGTCCATCA ACTACATCAT CGCCATCACG GGCATCTACC CGTCGCAGAG CTGA
|
|---|
| Protein sequence | MEPFIGEIRL FAGNYAPQGW LLCQGQLIDI SSNEILYALL GTTYGGDGRT TFALPNLQGA
LPVGQGQGPG LTARTIGQHL GVENVTLTQA QMPAHSHALF ATSDTATTIT PGPGAMLATV
PNPQGFYDAG TANPPTKAAF SSQAVGVAGA NLPHSNHMPT ASINYIIAIT GIYPSQS
|
|---|
| |