Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0084 |
Symbol | |
ID | 1218887 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 97383 |
End bp | 98288 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637236441 |
Product | amino-acid-binding periplasmic (PBP) ABC transporter protein |
Protein accession | NP_518205 |
Protein GI | 17544803 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.767728 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTTTCA CCCTTCGCTG TATCCCGCTC GCGCTGGCCG GCGCGATCGC TGCGTCCGTC CTGCCCGCGC AGGCCGAGGC GCTCGACGGC ACGCTCAAGA AGATCCAGGA CAGCAACACC ATCCTGATCG GCGTGCGCGA ATCGTCGATT CCGTTTTCGT ATCGCGACAG CAAGAACCAG ATCATCGGCT TCTCGGCCGA CCTGTGCTCG CGCGTGATCG ATGCGGTCAA GCAGAAGGTC GGCAAGCCGG ACCTGCAGGT GCAGCAGATT CCCGTCACCT CGCAGAACCG CACGGCGCTG GTGCAGAACG GCTCGGTGGA CCTGGAGTGC GGCGTGACCA CGCACCTGAA GTCGCGCGAG CAGCAGACGG CGTTCTCGAC CACCTTCTTC ATTGCCGCCA CGCGCCTGCT GACCAGCACG CATTCGGGGG TGAAGGACTT CCCGGATCTG GCCGGCAAGT CGGTCATCAC CAATGCCGGC ACCACGTCGG AGCGCATCCT GCGCAAGATG AACGACGAGA AGAAGATGAA CATGAACGTC ATCAGCGGCA AGGACTACGG CGAGTCTTTC CTGACGCTGC AGAGCGGCCG CGTGCAGGCC TTCATGATGG ATGACGTGCT GCTGGCCGGC GCGCGCACGC TGGCGCAGAA GCCGGCCGAC TGGGTCGTGA CCGGCACGCC GCAGTCGTTC GAGGCCTACG GCTTCATGCT GCGCAAGGAT GATCCCCAGT TCAAGAAGCT GGTGGACGAC ACCCTTACCG GCGTCATGAA ACGCGGCGAG ATCAGCACGC TGTATGCCAA GTGGTTCGAG AAGCCGGTGC CGCCCAAGGG CGTCAACTTC GGCTTCCCGA TGAGCGAGCA GCTCAAGGCG CTGTACACCA GTCCGAACGA CACGCCGTTC GAGTAG
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Protein sequence | MRFTLRCIPL ALAGAIAASV LPAQAEALDG TLKKIQDSNT ILIGVRESSI PFSYRDSKNQ IIGFSADLCS RVIDAVKQKV GKPDLQVQQI PVTSQNRTAL VQNGSVDLEC GVTTHLKSRE QQTAFSTTFF IAATRLLTST HSGVKDFPDL AGKSVITNAG TTSERILRKM NDEKKMNMNV ISGKDYGESF LTLQSGRVQA FMMDDVLLAG ARTLAQKPAD WVVTGTPQSF EAYGFMLRKD DPQFKKLVDD TLTGVMKRGE ISTLYAKWFE KPVPPKGVNF GFPMSEQLKA LYTSPNDTPF E
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