Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0054 |
Symbol | gatB |
ID | 1218856 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 59072 |
End bp | 60538 |
Gene Length | 1467 bp |
Protein Length | 488 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637236410 |
Product | aspartyl/glutamyl-tRNA amidotransferase subunit B |
Protein accession | NP_518175 |
Protein GI | 17544773 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0064] Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) |
TIGRFAM ID | [TIGR00133] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.184325 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAATGGG AAGTGGTGAT CGGCCTCGAA ACGCACGCAC AGCTTTCGAC CGCCTCGAAG ATTTTCTCCG GCGCCTCCAC CGCCTTCGGC GCGGCGCCCA ACACGCAGGC CGCGCCGGTT GATCTGGCGC TGCCCGGCGT GCTGCCGGTG CTCAACAAGG GCGCCGTCGA GCGCGCCATC ACGTTCGGCC TGGCCATCGG GGCCAAGATC GCGTCCAAGA GCATCTTCGC GCGCAAGAAT TACTTCTACC CCGATCTGCC CAAGGGCTAC CAGATCAGCC AGTATGAGAT TCCGGTGGTG CAGGGCGGCA CGCTGACCAT CCAGGTGGAA GGCAGGAACG GGCAGCCCGG CTACGAGAAG ACCGTCAACC TGACGCGCGC CCACCTGGAA GAAGACGCCG GCAAATCGCT GCACGAAGAC TTCGCCGGCA TGACCGGCAT CGACCTGAAC CGCGCCGGCA CGCCGCTGCT GGAGATCGTC ACCGAGCCCG ACATGCGCAG CGCGGCCGAA GCCGTGGCGT ATGCCCGCGC GCTGCACGCG CTGGTGATGT GGCTGGGCAT CTGCGACGGC AACATGCAGG AAGGCAGCTT CCGCTGCGAT GCCAACGTCT CGGTGCGCCG GGGCCCGGAC GCGCCGTTCG GCACACGCTG CGAGATCAAG AACCTGAACT CGTTCCGCTT CCTGGAAGAG GCCATCAACT ACGAAGTGCG CCGCCAGATC GAGCTGATCG AGGACGGCGG CACCGTGGTG CAGGAAACCC GCCTGTACGA CCCCGACCGC AAGGAAACGC GCTCGATGCG CAGCAAGGAA GACGCGCACG ACTACCGCTA CTTCCCCGAC CCCGACCTGC TGCCGCTGAT GATCGGCGCC GACTGGGTGG ACGCGGTGCG CGCCACGCTG CCGGAGCTGC CCGCCGCCAT GGCCGCGCGC TTCGAATCGG CCTACGGCCT GCCCCGGTAC GACGCCAGCA TCCTGACCGC CACCAAAGCC ACCGCCGCCT ACTTCGAGGC CGTGGTGGCC GCCGCCGGCG CGGCCAACGC CAAGGCGGCC GCCAACTGGA TCATGGGCGA GGTGGCCTCG AACCTGAACC GCGCCGGGCT GGAGATCGAT GCCGCGCCGG TGTCGCCCGT GCAACTGGCC GGGCTGCTGG CGCGCATCGC CGACGGCACC ATCTCCAACA ACACCGCCAA GAAGGACGTC TTCCCCGCCA TGTGGGCCGG CGAGCACGGC GGTGACGCCG ACGCCATCAT CGCCGAGAAG GGCCTCAAGC AGATGTCGGA TTCCGGCGAG CTGGAGAAGA TCATCGACGA GGTGCTGGCA GCCAACGCCA AGTCGGTCGA GGAATTCCGC GCCGGCAAGG ACAAGGCTTT CAACGCGCTG GTGGGCCAGG CGATGAAGGC CACGCGCGGC AAGGCCAACC CGAGCCAGGT CAACGAACTG CTGAAGAAGA AACTGGGCGC AGCCTGA
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Protein sequence | MQWEVVIGLE THAQLSTASK IFSGASTAFG AAPNTQAAPV DLALPGVLPV LNKGAVERAI TFGLAIGAKI ASKSIFARKN YFYPDLPKGY QISQYEIPVV QGGTLTIQVE GRNGQPGYEK TVNLTRAHLE EDAGKSLHED FAGMTGIDLN RAGTPLLEIV TEPDMRSAAE AVAYARALHA LVMWLGICDG NMQEGSFRCD ANVSVRRGPD APFGTRCEIK NLNSFRFLEE AINYEVRRQI ELIEDGGTVV QETRLYDPDR KETRSMRSKE DAHDYRYFPD PDLLPLMIGA DWVDAVRATL PELPAAMAAR FESAYGLPRY DASILTATKA TAAYFEAVVA AAGAANAKAA ANWIMGEVAS NLNRAGLEID AAPVSPVQLA GLLARIADGT ISNNTAKKDV FPAMWAGEHG GDADAIIAEK GLKQMSDSGE LEKIIDEVLA ANAKSVEEFR AGKDKAFNAL VGQAMKATRG KANPSQVNEL LKKKLGAA
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