| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_3292 |
|---|
| Symbol | |
|---|
| ID | 3721993 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007494 |
|---|
| Strand | - |
|---|
| Start bp | 350977 |
|---|
| End bp | 352578 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640072960 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_354800 |
|---|
| Protein GI | 77465297 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGGCCG ATTACATCAT CGTGGGGGCG GGCAGCGCGG GCTGCGTACT GGCGAACCGC
CTGTCCAAGG ATCCCTCGAA CCGCGTGCTG CTGATCGAGG CGGGCAAGCG CGACAATTAC
CACTGGGTGC ATATCCCGGT GGGCTATCTC TACTGCATCA ACAATCCCCG CACCGACTGG
TGCTTCACCA CCGAGCCCGA GGAAGGGCTG GAAGGTCGCA GCCTGATCTA CCCCCGCGGC
AAGGTGCTCG GCGGCTGTTC CTCGATCAAC GGCATGATCT ACATGCGCGG TCAGGCCGAG
GATTACGACG GCTGGCGCCA GATGGGCTGC ACCGGCTGGG GCTGGGACGA TGTGCTGCCC
CTCTTCCGCC GCCAGCAGGA CCATCACCGC GGCGAAAGCG AACATCACGG CGCGGGCGGC
GAATGGCGGG TGGAACGGGC GCGGGTCCGC TGGGCGGTAC TCGATGCTTT CCTCGATGCG
GCCGAGCAGG CGGGCATCCC GCGGACCGAG GATTTTAACC GCGGCTCGAA CGAGGGCGGC
GGCTATTTCG ACGTGAACCA GAGGTCCGGC ATCCGCTGGA ACACGGCCAA GGCCTTCCTG
AAGCCCGCCC TCTCCCGCCC GAACCTGCGC GTCGTGACCG AGGCGCAGGT TGAGCGGCTG
ATCGTCGAGG CGGGCGAGGT GCGGGGCGTG CTCTACCGGC AGGGCGGCAC CCTGCACGAG
GCCCGGGCGC GGCGCGAGAC GGTGCTTGCG GCGGGTGCCA TCGGCTCGCC GCACATTCTG
GAGCTTTCGG GCATCGGCGA TCCCGAGGTG CTGCGCGCGG CGGGCGTCGA GCCGCAGGTC
GCCGTGCCGG GCGTAGGTGC GAACCTGCAG GATCACCTGC AGCTCCGCCT CGTCTTCAAG
GTGCGGGGCG TGCCCACGCT GAACGAGAAG GCCACCAGCC TCTTCGGTCG CGCCGCGATC
GGGGCGGAAT ATCTCCTGCG CCGCTCGGGG CCGATGTCGA TGGCACCGAG TCAGGTCGGG
ATCTTCACCC GCTCCGGCTC CGAGAAGGCC ACGCCCGATC TCGAGTTCCA TGTCCAGCCG
GTCTCGCTCG ACAAGTTCGG CGACAAGGTC CACCCCTTCC CCGGCATGAC GGCGAGCGTC
TGCAACCTGC GCCCCGAAAG CCGCGGCAGC GTCCATCTGA AAAGCCCCGA TCCCGCGCGC
CAGCCCGCCA TCGCGCCGCA TTATCTTTCG ACCGAGGGCG ACCGCGAGGT GGCGGTGCGC
TCGATCCAGA TTGCGCGCCA TATCGCCTCG CAGCCCGCCT TCGCGCGGTT TCACCCCGAG
GAATACCGTC CGGGAGCCGA GCACGACACG CGCGAGGCGC TGGTCGCCGC CGCGGGCCGC
ATCGGCACCA CGATCTTCCA CCCGGTCGGC ACCTGCCGCA TGGGGTCGGA TCCGGCGAGC
GTCGTCGATC CGCGGCTGAA GTTCCGGGCG CTCGGCGGCC TCAGGATCGC GGATGCGTCG
ATCATGCCGG CCATCACCTC GGGAAACACC AACTCGCCCA CCCTCATGAT TGCCGAGAAG
GCGGCCGAGA TGATCCTCGA GGATGCCCGG CAGCGGGTTT GA
|
|---|
| Protein sequence | MEADYIIVGA GSAGCVLANR LSKDPSNRVL LIEAGKRDNY HWVHIPVGYL YCINNPRTDW
CFTTEPEEGL EGRSLIYPRG KVLGGCSSIN GMIYMRGQAE DYDGWRQMGC TGWGWDDVLP
LFRRQQDHHR GESEHHGAGG EWRVERARVR WAVLDAFLDA AEQAGIPRTE DFNRGSNEGG
GYFDVNQRSG IRWNTAKAFL KPALSRPNLR VVTEAQVERL IVEAGEVRGV LYRQGGTLHE
ARARRETVLA AGAIGSPHIL ELSGIGDPEV LRAAGVEPQV AVPGVGANLQ DHLQLRLVFK
VRGVPTLNEK ATSLFGRAAI GAEYLLRRSG PMSMAPSQVG IFTRSGSEKA TPDLEFHVQP
VSLDKFGDKV HPFPGMTASV CNLRPESRGS VHLKSPDPAR QPAIAPHYLS TEGDREVAVR
SIQIARHIAS QPAFARFHPE EYRPGAEHDT REALVAAAGR IGTTIFHPVG TCRMGSDPAS
VVDPRLKFRA LGGLRIADAS IMPAITSGNT NSPTLMIAEK AAEMILEDAR QRV
|
|---|
| |