| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_1479 |
|---|
| Symbol | OppC |
|---|
| ID | 3718715 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007493 |
|---|
| Strand | - |
|---|
| Start bp | 65030 |
|---|
| End bp | 66169 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640069627 |
|---|
| Product | ABC oligopeptide transporter, inner membrane subunit OppC |
|---|
| Protein accession | YP_351522 |
|---|
| Protein GI | 77462018 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.230564 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAGA TGCCCATTCC CACACCGGGC ACGCCCTCGC CCCAGCCCGA AGCCATCGTC
GGCCGCTCGC TCTGGCAGGA TGCCTGGATC CGGCTGCGCA GGAACCGCGC CGCCGTCGCC
TCGGCACTGG TGCTGGCCTT CCTGGGTCTC GTCGGCATCT TCGGCCCGAT GCTCTCGCCG
CACGACTACA CGCGGGTCTA TCCGCAGTTC GTGCGCGCCC CGGCCAGCCT CGAGCCCTAT
CCGCGGGCCG ACGTGGTGAT CCCGAGCTTC GAGCGCACCA TGGCCCGCGC CCGGATCGAG
GGCGCGCCCG TGCTGGAGAA CGGCACCGTC TCCGTCCGGA TCGAGGACGA GGACCCCATC
GACGACCGTA TCCTACGCTA CTTCCAGCGC TCGGACCTCT TCATCAATCC GCGGCTCGAC
CTCGCGCCCG ACGGGTTGAG CGGCACGCTC TCGGCCGATG TGGAGCAGCT CTATTTCCTC
TTCGGCACCG ATGCGGTGGG GCGGGACCTC ATGTCGCGCA TCTTCATCGG CGTCCGGATC
TCGCTCGCCA TCGGCCTGCT GGCCTCGGCC ATGGCGCTTC TGCTGGGCGT CACCTACGGG
GCCATCTCGG GCTATCTCGG CGGGCGGGTG GACAATGTGA TGATGCGGAT CGTGGACGTG
CTCTATTCGC TGCCGTTCAT CTTCTTCGTG ATCCTGCTCG TGGTCTTCTT CGGGCGAAAC
CTCGTCATCA TCTTCATCGC CATCGGCGCG ACCGAATGGC TCGACATGGC GCGGATCGTG
CGCGGCCAGA CCCTCAGCCT CAAGCGGCAG GAATTCGTGC AGGCGGCCGA GGCGCTCGGC
GCCACGCGCG CGGGCATCCT CATGCGCCAT GTGGTGCCGA ACACGCTCGG GCCGGTGATC
GTCTTCGTGA CGCTTCTCGT GCCCAAGGCC ATCCTGCTCG AGAGCCTGCT CTCGTTCCTC
GGCCTCGGTG TGCAGGAACC GCTGACCTCG CTGGGCCTCC TGATCTCGGA AGGGGCCGCC
AACATGCGCG GCGCGCCGTG GCTTCTGATC TGGCCCGCCC TCACGCTGAC CGCGATCCTG
TTCGCGCTGA ACTTCCTCGG CGACGGATTG CGCGACAGCC TCGACCCGAA GGACCGCTGA
|
|---|
| Protein sequence | MTEMPIPTPG TPSPQPEAIV GRSLWQDAWI RLRRNRAAVA SALVLAFLGL VGIFGPMLSP
HDYTRVYPQF VRAPASLEPY PRADVVIPSF ERTMARARIE GAPVLENGTV SVRIEDEDPI
DDRILRYFQR SDLFINPRLD LAPDGLSGTL SADVEQLYFL FGTDAVGRDL MSRIFIGVRI
SLAIGLLASA MALLLGVTYG AISGYLGGRV DNVMMRIVDV LYSLPFIFFV ILLVVFFGRN
LVIIFIAIGA TEWLDMARIV RGQTLSLKRQ EFVQAAEALG ATRAGILMRH VVPNTLGPVI
VFVTLLVPKA ILLESLLSFL GLGVQEPLTS LGLLISEGAA NMRGAPWLLI WPALTLTAIL
FALNFLGDGL RDSLDPKDR
|
|---|
| |