Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSP_1047 |
Symbol | rimM |
ID | 3720957 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides 2.4.1 |
Kingdom | Bacteria |
Replicon accession | NC_007493 |
Strand | - |
Start bp | 2807173 |
End bp | 2807682 |
Gene Length | 510 bp |
Protein Length | 169 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640072276 |
Product | 16S rRNA-processing protein RimM |
Protein accession | YP_354132 |
Protein GI | 77464628 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.105176 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCAAGA CCGACCGCGT CTGCGTGGGT GCCATCGCCG GAGCTTTCGG CGTGAAGGGC GAGGTGCGGC TGAAGTCCTT CTGCACCGAG CCGACCGACA TCGCCTCCTA CGGCCCGCTC TCGACCGAAA AGGGCGACCG CAGCTTCCGC GTGACGCTCA CCCGGCCGGT CGCGGGCGGG CTCGGCGCGC GTCTGTCGGA CGTCACGACC AAGGAAGAGG CCGACGCCCT GCGCGGCGTG GGGCTTTATG TCGACCGCGC GCGGCTCCCC TCGCTCGGCG ACGACGAATT CTATCATGCC GACCTGATCG GGCTCGAGGT GCGCGACACC GGGGGCGCGC TTCTGGGCCG GGTCCATGCC GTGCACAACC ACGGCGCGGG CGACATTCTC GAGGTCGCCG GCGCGGCCGG GCGCGAGGGT CTCCTCCTGC CCTTCACCCG CGCCGTCGTG CCGACGGTCG ATCTGGCCGC AGGCCGCATC GTGGCCGACC CGCCCGAGGG GCTCGACTGA
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Protein sequence | MTKTDRVCVG AIAGAFGVKG EVRLKSFCTE PTDIASYGPL STEKGDRSFR VTLTRPVAGG LGARLSDVTT KEEADALRGV GLYVDRARLP SLGDDEFYHA DLIGLEVRDT GGALLGRVHA VHNHGAGDIL EVAGAAGREG LLLPFTRAVV PTVDLAAGRI VADPPEGLD
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