| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_0893 |
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| Symbol | |
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| ID | 3718360 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides 2.4.1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007493 |
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| Strand | + |
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| Start bp | 2644268 |
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| End bp | 2645569 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640072118 |
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| Product | RTX secretion protein D |
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| Protein accession | YP_353976 |
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| Protein GI | 77464472 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.276128 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCGCC CCGTCCCCTG GTCGAGCCGC AAGCCGCTGA TCCTCGGCTT CGCGACGCTC
GCCCTCCTCG TCGGCGGCTT CGGCACCTGG AGCGTGGCCT CCTCCATCTC GGGGGCCATC
GTGGTGCAGG GCCAGATCGA GGTCGAGCAG AACCGGCAGG TCGTCCAGCA TCCCGACGGC
GGAGTGGTCG AGAGCATCGA GGTCTCGGAA GGATCCGTGG TGCAGGCGGG CGACATTCTG
CTGCGGTTCG ACGGCACGAC GCTGCGCACC GAGCTTGCGA TCGTCGAGGG GCAGCTTTTC
GAGATGCTGG CCCGCCGCGC GCGGCTCGAG GCCGAACGCG ACGACGCCAA GGGCCTGGGC
GTCTTTCCGG CCCTCCTGGA GGCGGAGAAG AACCGTCCCG TCGTGGCCGA GCAGATCGAG
GGGCAGAAGC GCCTCTTCGC CGCGCGGAGC GAGAGCTTCG CCCAGCAGAT CGAACAGCTC
GGCAAGCGCA AGGCGCAGAT CGTGAGCCAG ATCGAGGGCG TGGATGCCCA GATCTCCGCT
CTGGGCACCC AGCTGCGGCT GATCGAGGAA GAGCTCTCCG ACCAGCAGGA CCTTCTGTCC
AAGGGTCTGG CGCAGGCCAG CCGGGTGCTC AGCCTGCAGC GCGAGGAAGC GCGGCTCGAG
GGCGAGCTGG GCGAGCTCAC CGCCTCGCGG GCCAACAACG AAGGCCGCAT GACCGAGCTC
GACATCGAGA TGCTGCGCTT GGGCTCGACC CGCCGCGAGG AGGCGATCAC CCAGCTGCGC
GACTTCGGCT ACCGCGAACT GGAACTGGCC GAACGGCGCA GCGCGCTGAT CGAGCAGATC
AACCGGCTGG ATCTGCGCGC CCCGGTCTCG GGCATCGTTC TGGGGCTGCA GGTGACGACC
CCCCGGGCCG TGGTGCGGGC GGCCGATCCG GTGCTCTACA TCATCCCGCA GGATCGCCCG
CTGGTGATCG CGGGCCATGT GCCGCCGATC CATATCGACG AAGTGGCGGT GGGCCAGCCC
GTGCGCCTCG TCTTCTCGGC CTTCTCCAGC CGCACGACAC CCGAGCTCAC CGGCCATGTC
ACCGTGCTCT CCGCCGATGC GCTGACCGAC AACCGGACCC AGACCTCCTA CTACCGGGCC
GAGATCATGC TCGACCCCGG CGAGACGGCA AAGCTCGAGG ATCGCAACCT CGTCCCGGGG
ATGCCGGTCG AGGCCTTCAT CCGCACGGGA GAGCGCTCGC CGCTGGCCTA CCTGCTGAAG
CCCTTCACCG ACTATTTCAA CCGCGCCATG CGCGAGACCT GA
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| Protein sequence | MSRPVPWSSR KPLILGFATL ALLVGGFGTW SVASSISGAI VVQGQIEVEQ NRQVVQHPDG
GVVESIEVSE GSVVQAGDIL LRFDGTTLRT ELAIVEGQLF EMLARRARLE AERDDAKGLG
VFPALLEAEK NRPVVAEQIE GQKRLFAARS ESFAQQIEQL GKRKAQIVSQ IEGVDAQISA
LGTQLRLIEE ELSDQQDLLS KGLAQASRVL SLQREEARLE GELGELTASR ANNEGRMTEL
DIEMLRLGST RREEAITQLR DFGYRELELA ERRSALIEQI NRLDLRAPVS GIVLGLQVTT
PRAVVRAADP VLYIIPQDRP LVIAGHVPPI HIDEVAVGQP VRLVFSAFSS RTTPELTGHV
TVLSADALTD NRTQTSYYRA EIMLDPGETA KLEDRNLVPG MPVEAFIRTG ERSPLAYLLK
PFTDYFNRAM RET
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