Gene RSP_0053 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSP_0053 
SymbolfliF1 
ID3719960 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodobacter sphaeroides 2.4.1 
KingdomBacteria 
Replicon accessionNC_007493 
Strand
Start bp1759605 
End bp1761317 
Gene Length1713 bp 
Protein Length570 aa 
Translation table11 
GC content73% 
IMG OID640071255 
Productflagellar FliF M-ring protein 
Protein accessionYP_353128 
Protein GI77463624 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein 
TIGRFAM ID[TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCCCTT CTCCCACGCC TCCCGCCGTG CGCGGACCTG CCAGCGCACT GATCCCGCAG 
ATGCGCGGCA TGGTGGAGCA GATCCGCCGG TTCGGCGACC AGCCGGGCCT GCGCCGCGCC
ATGCCCGCCA TCCTCATCCT CGCGGTGACG GTGCTCGCGC TGGCCGGATG GATCCTCCTG
CGGGAACCCG CCCGCGTGAC GCTCTATCCC GGCCTGCCCG AGGCCGAGAA GGCGCGCGTG
ATCGACAGCC TGACCGGCGG CGGCATCGCG GCCGTGATCG ACGAGCGCAC CGGCGAGGTG
GCGGTGCCGG GCGCCGACTA TCACCGCGCG CGGATGCTGC TCGCGGCCCA GGGCCTGCCG
CAGGGTCTGC CCGACGGGAA TGCGCTTCTG AGCGATCTGC CGATGGGCAC CTCGAAATCG
GTCGAGACGG CGCGGCTCCG GCAGGCGCAG GAGCTCGATC TCGCGCGGTC GATCACCGAG
ATTTCCGCCG TCTCGGCCGC GCGCGTGCAT CTGGCGCTGC CCGAACGCTC GGCCTTCCTG
CGCGAGAGCC AGCCGCCGCG GGCGAGCGTC TTTCTCCAGA TCGTGCCGGG GCGCACGCTC
GACGGCGCGC AGGTCGAGGC CATCGTGAAC CTCGTCTCCT CTTCGGTGCC GGGCATGGCG
CGGCAGGATG TGACGGTGGT CGACCAGATG GGGCGGCTCC TGTCGCGGGG CTCGGACGAT
CCGGCCGTGC TGCTGAACGA CCGCCAGCTC CAGCACCGGG TGCAGCTCGA GACGCTCTAC
CGCAACCGGA TCGAGAGCCT GCTCACCCCT ATCGCGGGGC CGGGCAACCT TGCGGTGCAG
GTCACGATCG ACATGGATTT CACCCGCCAG GAGATCCGCG AGGAGCAGGT CGACCCCGAC
CGCACCGCGC TGCTGGCCGA GCAAAGCCAG ATCGAGGAGA CGGCCGACCC GCAGGCCCGG
GGCATTCCGG GCGCCGTGTC GAACAGCCCG CCGCCCGAGG CCGCGCTCGA GGCCGGCGCG
CCGCCCACCG CCGCGGGCGA GGCGGCAACG CCGATGCGCA GCCGGTCGCA GAACTCGACC
CGCAATTTCG AGGTGAGCCG CAAGGTCGAG ACCACCCTGC CCGCCACCGC CCGCATCGCG
CGGGTGAGTG CGGCGGTCGT GGTGCGCGCC CAGCCGCAGC CCGCCGCCAC CGATCCCGCA
GCCCCGCCGC CCCCGCTCCT GCCCGAGGCG CTGAAGGCCG ATCTCGAGCG GCTGACCCGC
TCGGCGGTGG GCTTCGACGC CGACCGGGGC GATGTGGTGA CGATCACGGC CCAGCCCTTC
CTCGACACGG TGGTGCCCGA GGCTTCCGGC TGGAGCGCCG AGCCGTGGCT CGCGGATCTG
GCGCGGCAGG GCTTCCTTCT CGCGGCGCTG GCCGTGGTGG CGCTGGGCGT CGTGCGGCCG
ATCCTGAACC GCGTGCTTCT GCCCGCACCC GCCGCAGCCG GCGCGCTGCC TCTGGGCGAA
ACGGCGGTGG AAGTGGGCGA AGGCGAGAGC CTCGACGACG TACGCGCCCG CCTCAAGGCG
CGTCAGGGGG CGCTGACCAA GAACATGCTG GATGCGGCGC GCAGCCACGA GGAGCAGATC
CTCGTCATCC GCAAGCTCGT CGAGGAGGAC GAGGGCCGCA TCGCCACCAC CATCCGCCAG
ATGATCGCGG CCGAGCTCGA CACCGTGAAG TGA
 
Protein sequence
MAPSPTPPAV RGPASALIPQ MRGMVEQIRR FGDQPGLRRA MPAILILAVT VLALAGWILL 
REPARVTLYP GLPEAEKARV IDSLTGGGIA AVIDERTGEV AVPGADYHRA RMLLAAQGLP
QGLPDGNALL SDLPMGTSKS VETARLRQAQ ELDLARSITE ISAVSAARVH LALPERSAFL
RESQPPRASV FLQIVPGRTL DGAQVEAIVN LVSSSVPGMA RQDVTVVDQM GRLLSRGSDD
PAVLLNDRQL QHRVQLETLY RNRIESLLTP IAGPGNLAVQ VTIDMDFTRQ EIREEQVDPD
RTALLAEQSQ IEETADPQAR GIPGAVSNSP PPEAALEAGA PPTAAGEAAT PMRSRSQNST
RNFEVSRKVE TTLPATARIA RVSAAVVVRA QPQPAATDPA APPPPLLPEA LKADLERLTR
SAVGFDADRG DVVTITAQPF LDTVVPEASG WSAEPWLADL ARQGFLLAAL AVVALGVVRP
ILNRVLLPAP AAAGALPLGE TAVEVGEGES LDDVRARLKA RQGALTKNML DAARSHEEQI
LVIRKLVEED EGRIATTIRQ MIAAELDTVK