Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS05405 |
Symbol | RSp0928 |
ID | 1223235 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | + |
Start bp | 1168588 |
End bp | 1171731 |
Gene Length | 3144 bp |
Protein Length | 1047 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637240788 |
Product | cation efflux system transmembrane protein |
Protein accession | NP_522489 |
Protein GI | 17549149 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3696] Putative silver efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTGCGC GCCTCATCTT CGCCTCCATC CGCAACCGCT TCCTGGTGCT GCTGACTACG GCCTTGCTGA CGGCGTGGGG GCTGTGGGCG GTACGCAGCA CGCCGCTCGA TGCGCTGCCC GATCTGTCGG ACGTGCAGGT CATCATCCGC ACCCCCTTCC CGGGCCAGGC CCCGCAGATC GTCGAGAACC AGGTCACCTA TCCGCTCACC ACCACGATGC TGTCGGTGCC GGGGGCCAAG ACGGTGCGCG GCTATTCGTT CTTTGGGGAT TCGTTCGTCT ACGTGCTGTT CGAAGACGGG ACGGATCTGT ACTGGGCGCG CTCGCGTGTG CTGGAGTACT TGAATCAGGT GCAGTCCCGC CTGCCGGTGG CGGCCAAGCC GGCATTGGGG CCGGATGCGA CCGGCGTCGG CTGGGTCTAC GAATACGCGC TGGTCGACAA AACCGGCCGC CACGACCTGG CCCAACTGCG CGCGCTGCAG GACTGGTTCC TGCGCTTCGA GCTGAAGGCA TTGCCGAACG TGGCGGAAGT GGCGTCCGTG GGCGGCATGG TCAAGCAGTT CCAGGTGGTG CTGCAGCCGG ACAAGCTGCG CGCGTACAAC CTGTCGCAGG CCAAGGTGCT GGCGGCGCTC AAGGGCGCCA ACCAGGAGAC CGGCGGGTCC GTGCTGGAGT TGGGCGAAGC CGAGTACATG GTGCGCGCCA GCGGCTACCT GAAGACGCTC GACGACTTTC GCCAGATTCC GCTGGCAACG AGCGATGCCG GTGTCGCCGT GCGGCTGGGC GACGTCGCCA CCGTCCAGCT CGGACCCGAG ATGCGGCGCG GCATCGCCGA GCTGGACGGT CAGGGCGAAG TCGCTGGCGG TGTCATCGTG ATGCGCTCCG GCAAGAACGC GCTGGAGACG ATCGAGGCCG TCAAGGCCAA GCTCGCCGCG CTGCGGAAGA GTCTGCCGGT GGGCGTGGAG ATTGTGCCGG TCTACGACCG CTCTGCGCTC ATCCACCGCG CGGTGGACAA CCTCACGCAC AAGCTGATCG AGGAGTTCAT CGTGGTGGCG CTGGTGTGCG TGGTGTTCCT GTTTCACCTG AGATCGGCCT TGGTGGCGAT CGTCTCGCTG CCGCTGGGCG TGCTGGCGGC GTTCCTGGTG ATGCGCTACC AGGGCGTGAA CGCCAACATC ATGTCGCTGG GCGGTATCGC CATCGCGGTG GGCGCCATGG TGGATGCGGC CGTGGTGATG ATCGAGAACG CGCACAAGCA CCTGGAGCGC TGGCACGAGG CACATCCGGG GCACGCGCTG GCCGGGCACG AGCGCTGGGG TGTCATCGGC GAAGCGGCTG CGGAGGTGGG GCCGGCGCTG TTCTTCTCGC TGCTGATCAT CACGCTGTCG TTCATCCCGG TGTTCACGCT GGAGGCGCAG GAGGGGCGGC TGTTCTCGCC GCTGGCCTTC ACCAAGACGT ATTCGATGGC GGCGGCGGCT GGGCTGTCGG TCACGCTGGT GCCGGTGCTG ATGGGCTACC TGATCCGCGG GCAGATCCCG AGCGAGCAGT CGAACCCGCT CAGCCGCTGG CTGATCCGCC TGTACCAGCC GGTGCTGGCC CGTGTACTGG CGTACCCGCG GGCGACGGTG GCCATCGCCC TTGTGCTGCT GGCGGCCACG GCCTGGCCGA TCCTGCGTAC GGGCGGCGAG TTCATGCCGC CGCTGGACGA AGGCGACCTG CTGTACATGC CGTCGGCGCT GCCGGGGTTG TCGGCCGGCA AGGCGGCACA GTTGCTGCAG CAGACCGACC GGCTCATCAA GACCGTGCCC GAGGTGGCCA CGGTGTTCGG CAAAGCGGGC CGCGCCGACA CCGCCACCGA TCCGGCGCCG ATGGAGATGT TCGAGACCAC CATCCGGTTC AAGCCGCGCG ACCAGTGGCG GCCGGGCATG ACGACCGACA AGCTGGTCGA CGAGCTGGAC CGCGTGGTCA AGGTGCCGGG CCTGTCCAAC ATCTGGGTGC CGCCCATCCG CAACCGCATC GACATGCTGG CCACCGGCAT CAAGAGCCCG GTCGGCATCA AGGTGGCGGG CACCGACCTG CAGCAGATCG ACCGGCTCAC CACGCAGATC GAGGCCGCGG TCAAGACCGT GCCCGGCGTC ACTTCGGCAC TGGCCGAGCG GCTCTCAGGC GGACGCTACA TCGACGTCGA CATCCACCGC ATGGCCGCCG GCCGCTACGG CCTGAACATC GAGGACGTGC AGAGCATCGT GGCCTCCGCC ATCGGCGGCG ACAACGTCGG TGAAGTCGTG GACGGGCTGG CGCGCTTTCC GGTCAACCTG CGCTATCCGC GCGACTACCG GGATTCGGTC GAGCAATTGC GCAGCCTGCC GATCGTGACG GACCGGGGCC AGCAGATCGT GTTGTCCGAC GTGGCGGACA TCCGCGTCGT GTCAGGCCCG CCGATGCTGC GCAGCGAGAA CGCGCGCCTG TCCGGCTGGG TGTACGTGGA CATCCGCGGG CGCGACCTGC GCTCGGCGGT GCGCGACATG CAGGCGGCGG TGGCCAAGGC GGTGCCGATG CCGGCCGGCT ATGCACTGAG CTGGTCCGGC CAGTTCGAAT ATCTGGAGCG CGCCAGCACC AAGCTCAAGG TGGTGGTGCC GTTCACGCTG CTCATCATCT TCGTGCTGCT GTACCTGGTA TTCGGCCGCA TCGACGAGGC ACTGTTGATC ATGGGCACGC TGCCGCTGGC GTTGATCGGC GGGTTCTGGC TGCTGTACGG GCTGGGCTAC AACTTGTCAG TAGCGGGCGT GGTCGGCTTC ATTGCGCTGG CGGGTGTGGC GGCGGAGTTC GGCGTCATCA TGCTGCTCTA CCTCAAGCAG GCCTGGACCG AGCGCCAGGA GCGCGGCCAA ACCACGACTG ACGCATTGCT TGAGGCCATC CAGGAAGGCG CCGTACTGCG CGTACGCCCC AAGGCCATGA CGGTGGCCGT CGTCCTGGCC GGCCTGATCC CGATCATGTG GTCACACGGC ACGGGCTCCG AAGTCATGCA GCGCATCGCC GCGCCGATGG TCGGCGGCAT GGTGACCGCG CCCTTGCTTT CTCTGCTTGT TGTTCCTGCT GTCTACCTGC TGTTGCGCAG GCGCAGCGTG TCATCCCCTT CCCAACCCCG CTAG
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Protein sequence | MIARLIFASI RNRFLVLLTT ALLTAWGLWA VRSTPLDALP DLSDVQVIIR TPFPGQAPQI VENQVTYPLT TTMLSVPGAK TVRGYSFFGD SFVYVLFEDG TDLYWARSRV LEYLNQVQSR LPVAAKPALG PDATGVGWVY EYALVDKTGR HDLAQLRALQ DWFLRFELKA LPNVAEVASV GGMVKQFQVV LQPDKLRAYN LSQAKVLAAL KGANQETGGS VLELGEAEYM VRASGYLKTL DDFRQIPLAT SDAGVAVRLG DVATVQLGPE MRRGIAELDG QGEVAGGVIV MRSGKNALET IEAVKAKLAA LRKSLPVGVE IVPVYDRSAL IHRAVDNLTH KLIEEFIVVA LVCVVFLFHL RSALVAIVSL PLGVLAAFLV MRYQGVNANI MSLGGIAIAV GAMVDAAVVM IENAHKHLER WHEAHPGHAL AGHERWGVIG EAAAEVGPAL FFSLLIITLS FIPVFTLEAQ EGRLFSPLAF TKTYSMAAAA GLSVTLVPVL MGYLIRGQIP SEQSNPLSRW LIRLYQPVLA RVLAYPRATV AIALVLLAAT AWPILRTGGE FMPPLDEGDL LYMPSALPGL SAGKAAQLLQ QTDRLIKTVP EVATVFGKAG RADTATDPAP MEMFETTIRF KPRDQWRPGM TTDKLVDELD RVVKVPGLSN IWVPPIRNRI DMLATGIKSP VGIKVAGTDL QQIDRLTTQI EAAVKTVPGV TSALAERLSG GRYIDVDIHR MAAGRYGLNI EDVQSIVASA IGGDNVGEVV DGLARFPVNL RYPRDYRDSV EQLRSLPIVT DRGQQIVLSD VADIRVVSGP PMLRSENARL SGWVYVDIRG RDLRSAVRDM QAAVAKAVPM PAGYALSWSG QFEYLERAST KLKVVVPFTL LIIFVLLYLV FGRIDEALLI MGTLPLALIG GFWLLYGLGY NLSVAGVVGF IALAGVAAEF GVIMLLYLKQ AWTERQERGQ TTTDALLEAI QEGAVLRVRP KAMTVAVVLA GLIPIMWSHG TGSEVMQRIA APMVGGMVTA PLLSLLVVPA VYLLLRRRSV SSPSQPR
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