Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS05333 |
Symbol | RSp1288 |
ID | 1223600 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | - |
Start bp | 1637074 |
End bp | 1640409 |
Gene Length | 3336 bp |
Protein Length | 1111 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637241151 |
Product | putative type-4 fimbrial biogenesis pily1-related protein |
Protein accession | NP_522847 |
Protein GI | 17549507 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.476781 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAACA AGAAGCAATG GACTTTCCTG CTGGCGGTGG CCGCCGCGTT GCCGGGCGTC TCGCGGGCCC AGCTCGTCAT CAGTGACACG CTGACCGGCG CGTCCTCCTC GTACGACTGG AAGGCGCTGA ACGGCGCCTG CCTGACGGCG GGCAACAATA CCGGCTCGAT TCCCGCGTGC TCCGGGCTGA GCTACTACAG CGGCAAGACC CTGGTCGGCG GCGCCACCGG CACCTTGCCC GATGCGGTGG GCTCGGGCGC CTTGCGCCTG ACCAACGGCG ATACCTCGAC CAGCGGCTCC AACGGGACGT ATCAGACCGG TGCCGTGGTG TCGAACTTCA CGTTCCCGAG CACCCAGGGC CTGCAGGTCA CGTTCACGAC CGTGACCTAC GGCGGCAACA ATTACAGCGG CACCGGCGCG GACGGCATCA GCTTCTTCCT GGCCGACGGC TCGAAGTCGG CGACGGTCGG GGCGCTGGGC GGGAGCCTCG GGTACAGCTG CTCGAACGTG AACAGCACGT ACGACGGCGT GCTGGGCGGC TATATCGGGC TGGGCATCGA CGAATTCGGC AACTTCTCCA ACAGCAGCGA CAACACCAGT TCCGGTACCG GCTTCAAGGC CAGCCGGATC AGCCTGCGCG GTGCCGGCAG CACCAACTGG TCCTATCTGA ATGCGACCTA TCCCAGCTAC TACCCGTCTT CGCTGAGCGC TTCGCAGCAG GCCACGGCGG TCAAGAAGAC CTGTTCGACC GGCTACCTCT ACGACTTCAG CCAGGGGAGC TGGAGCCCGA CCAAGAAATC GGCGCTGACC TACAACTACA ATTACATCAC CGGCGATGAC CTGTCGTTCA CGATCGCGAA CCAGGAAGCC GTCTCGAAGC CGCTGCGCGG CTCCGCCGTG CCCATCACGT ATGGCCTGAC GATCACGCAG GACGGCCTGC TGAGCCTGTC GTACAGCATC AACGGCGGCA CGGCGCAGCC GGTGATCACC AGCCAGAGCA TCACGTCGTC CAACGGCGCG TTGCCCGCGT CGTTCCGGTT CGGCTTCTCC GCGGGCACGG GCGGCGGCAG CAACGTGCAC GAGATCACCT GCTTCAAGGC CGCGCCCGTC GAGCAGTCGA GCAGCTCGGC CGGCGCCAAC GTGCAGCAGT CGGCCCGGGT CGAGGCCGGC ACGCAGCTGT ACCTGGCCTA CTACCACCCG AGCAACTGGT GGGGCGAGCT GACCGCGCAA AGCCTGCTGG TGGACTCGAC CACCGGCACC GTGTCGATTG CCTCGACGGC GAACTGGGAT GCCAGCTGCA CGCTGACGGG CGGCTCCTGC CAAGCGATGG GCAGTTCGGC CACGGTCACG GCCACCAGCC CCGCGTCGCG CAAGATCCTG ACCTGGAATG GCTCCGCCGG CATTCCTTTC GAGTGGAGCA ACCTGAGCTC GACGCAGCAG TCGTCGCTGA CGTCCGGCGA CAGCACCGTC AACAGCAACC GGCTGCTGTA CCTGCGCGGC GACCGCACCC AGGAAGCGAG CAGCAGCGGC CCCTACCGCA CGCGCACCGG CGTGCTGGGC GACATCATCA ACTCGAGCCC GACCTGGGTC GGCGCGCCAT CCTCGTCGTA CAACGGCCCG TGGGTCGACG CGCTGAACGG CTCGGCTTCG CCGGCGGAGC CGACGGGCAG CTATGCCACC TTCAAGAGCA CCTACGCCAC GCGCCAGAAC GTCGTCTATG TGGGCGCCAA CGACGGCATG GTGCACGGAT TCCGCGCGGG CGCGTACGAC TCGAGCGGCA ACTTCGTGAG CACCACCGCC ACGCCCAACG ATGGCGTGGA GGCGCTGGCC TACATGCCGG CAGCGGTGCT GAGCACGATC CACAGCACCA CCGGCAAGGT CGACTTCAGC TCGCCGTCGT ACTCGCACAA CCTGTACGTC GACGCCACGC CCGGCACCGG GGATCTGTAC TACAACGGCG CCTGGCACAC CTGGCTCGTC GGCGGCCTCG GTGGCGGCGG CAATGCCGCC GGCACCATCG CGGACAGCAC GACTTCGGCC AGCGGCACGA TCTACGCGCT GGACATCACC GATCCGACCC AGTTCAGCGA AGGCAACGCC GGCTCGCTGG TGATCGGCGA GTGGTCGTCT TCTAGCCTGA CCTGCGCCAA CGTCACCAAT TGCGGCCAGT ACCTGGGCAA TACCTACGGC ACCCCGGTCA TTCGTCGCCT GCACAACGGG ATGTGGGCGG TCCTGTTCGG CAATGGCTAC AACAGCAAAA ACGGTACGGC CGGCCTGTTC GTGATGCTGG TGGACCCCAG CAGCGGCGCG AAGACGTTCT ACTATTTCGA CACCGGCTAC GGCGCGGCCA AGGACCCGAC GGGCAAGGGC GGCAAGAACG GCATCGCCTA TGTCACGCCG GCCGACCTGG ACGGCGATCA CATCACCGAT TACGTCTATG CCGGCGATCT GTTCGGCAAC GTCTGGCGCT TTGACCTGAC GGCGGCCACC GCGTCTTCGT GGTCGGTGGC CTCGTCGCCG CTGTTCTCGA CCACGGCCGG CCAGCCGATC TCGTCCAAGG TGGTGGTGGC GTCCGTTCCG GACACCGCGG GCGGGAACCC GCGCGTTGTG GTCGCCTTCG GCACGGGCCT GAGCCTGCCC GCCACGCTGA CCAGCGCGGC GGCGTATGCG ACGTCCAGCC AGGCCCTCTA CGGCGTCTGG GACTGGAACA TGAGCGCCTG GAACGCGAAG GCGGCGGCAA CGTCGCAGTA CAGCTCGCTG GCCGCGCCGC AGACCGTGAC CGTATCGTCG CTGCAGACGC AGACCATCAC CTCGCAGTCC ACCGCCAGCG GCTCGACGGC GTCGTACCGG ACCGTCAGCA CGAACAAGGT CTGCTGGCAG GGGTCGAGCG TCTGCTCCAG CGGCAACAAC CAATACGGCT GGAAGCTGGT GCTGCCGAGC ACGACGTCGG GCTCCACCAC CAACTACGAG CAGGTCATCT ATAACCCGAC GCTGGCGTAC GGCATGTTCG TCGTGAACAC CACCATTCCG GCGGTGACGC AGATCCTGTC CTGCAGCACC ACGCAGGCCT CGGGCTACAC CATGGCGATC ACGATCGGCG CCGGCGGCGC GGGGTCATCC TCGTTCTTCG GGGACAGCAA CGGCAACTTC TCCACCTACA ACGGCGGCAT CGTGAGCGGC ATCGGCCTGA GCGGCACGGG CACGCCCTCG TTCGTCACGA CGGACAGCGG GGTGACCATG GTGCAGCAGA CCAGCGACGG CAAGGGTTCT GCGACCGCGG TCAACCCCGG CGCCTCGGCG ACCGGCTCGC GTGTCAATTG GGTCAAGCTG CGCTAA
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Protein sequence | MMNKKQWTFL LAVAAALPGV SRAQLVISDT LTGASSSYDW KALNGACLTA GNNTGSIPAC SGLSYYSGKT LVGGATGTLP DAVGSGALRL TNGDTSTSGS NGTYQTGAVV SNFTFPSTQG LQVTFTTVTY GGNNYSGTGA DGISFFLADG SKSATVGALG GSLGYSCSNV NSTYDGVLGG YIGLGIDEFG NFSNSSDNTS SGTGFKASRI SLRGAGSTNW SYLNATYPSY YPSSLSASQQ ATAVKKTCST GYLYDFSQGS WSPTKKSALT YNYNYITGDD LSFTIANQEA VSKPLRGSAV PITYGLTITQ DGLLSLSYSI NGGTAQPVIT SQSITSSNGA LPASFRFGFS AGTGGGSNVH EITCFKAAPV EQSSSSAGAN VQQSARVEAG TQLYLAYYHP SNWWGELTAQ SLLVDSTTGT VSIASTANWD ASCTLTGGSC QAMGSSATVT ATSPASRKIL TWNGSAGIPF EWSNLSSTQQ SSLTSGDSTV NSNRLLYLRG DRTQEASSSG PYRTRTGVLG DIINSSPTWV GAPSSSYNGP WVDALNGSAS PAEPTGSYAT FKSTYATRQN VVYVGANDGM VHGFRAGAYD SSGNFVSTTA TPNDGVEALA YMPAAVLSTI HSTTGKVDFS SPSYSHNLYV DATPGTGDLY YNGAWHTWLV GGLGGGGNAA GTIADSTTSA SGTIYALDIT DPTQFSEGNA GSLVIGEWSS SSLTCANVTN CGQYLGNTYG TPVIRRLHNG MWAVLFGNGY NSKNGTAGLF VMLVDPSSGA KTFYYFDTGY GAAKDPTGKG GKNGIAYVTP ADLDGDHITD YVYAGDLFGN VWRFDLTAAT ASSWSVASSP LFSTTAGQPI SSKVVVASVP DTAGGNPRVV VAFGTGLSLP ATLTSAAAYA TSSQALYGVW DWNMSAWNAK AAATSQYSSL AAPQTVTVSS LQTQTITSQS TASGSTASYR TVSTNKVCWQ GSSVCSSGNN QYGWKLVLPS TTSGSTTNYE QVIYNPTLAY GMFVVNTTIP AVTQILSCST TQASGYTMAI TIGAGGAGSS SFFGDSNGNF STYNGGIVSG IGLSGTGTPS FVTTDSGVTM VQQTSDGKGS ATAVNPGASA TGSRVNWVKL R
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