Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS05182 |
Symbol | RSp0241 |
ID | 1222372 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | - |
Start bp | 308986 |
End bp | 312591 |
Gene Length | 3606 bp |
Protein Length | 1201 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 637240100 |
Product | putative alpha-amylase-related protein |
Protein accession | NP_521802 |
Protein GI | 17548462 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00237217 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.176867 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGATC CGAAGACGTT CGCGGCACCC GCCTCCCGCA CCCCGCCCGC CACGCCGCCC CGCGCGGCGG AAGACACGCA GCAGCCGGCC GCCGCGCAAA CGCCCACGCA AGCACCTCCC GCGGCAACCC CGCACGCCCG GCCCGAGGCG CAGTGGAGCG CGGCGGCATT CACGCCGGCG ATCTGCTATC TCCATCCCTT GCAGCAGGGT CCGCTCGACC AGTGGGGCGG TCTGCTGGAC CGCATCGCCG CGCTCGGCTT CGACCATGTG CTGATCGCGC CGCCGTTTGC GGTGGGCGCG GGCGGCAACG TGTTCGTCAC GCGCGACCAC GCGCGGCTGC ATGCCGCGCT CGGCGGCGGA CCCGCACATG CGGCGCTGGG CCGGCTGGCC GACGCTTGCC GGCAGCGCGG CCTGACCCTG CTGATGGACC TGGTGATCGA CCGCGTGGCG ACCGACGCCC CGCTGCGCGC CGACCACCCC GGCTGGTTCC ACTGCCGCGC CGAGCACGGC GACGCGCTGG ACCCGCGCCT GCCGCCGTCG CACCTGGAGG TGGCCTCGTT CCGCCACGAC GACGCGCATT GCGCCGAGGC CATCGGCGCG TGGTGGATGC AGCAACTGCG CGCGTGGACG GCGCTCGGCA TCGGCGGCTT CCGCTGCGAG GCGCCGGCCC GCCTGCCGGC GGCGCGCTGG CACCCGCTGA TCGCGGCCAC GCGCGAGGGC GCCGGCGCGC GGCCGGTGCG CTTCCTGGCC TGGACGCCGG GCCTGGACGG CCGGGCCGTC GAGGCCCTGG CCGACGCCGG CTTCGATGCC ACCTTCTCGT CGCTGCGCTG GTGGGATTTC CGCGCCGGCT GGATGGTGGA GGAACACGCG CGGCTGGCCG CCGTCGCGCC GCCCATCGCC ACGGTGGAGG CGCCGTTCGG CACGCGCTAC GGCCAGGCCT TCGGCGATGC CATGACGCGC GAGCGGGCCT ACCGGCGCAT GCTCGACGTG GCGGACGTGC TGGGTGCCGG CTGGCTGATG CCGTTCGGCT TCGAGCGCGG CGCGCTGCTG CCGATGCTGC CCGATCGCGG CGACCCGACC GACGCGCAGT GGATCGACGC GCATGCGGCC TTCGACCTGT CCGACGCGGT GCGCGACGTG AACGCGACGC TGCGTGCCGC GCAGGCCGCC GGCACGGTGG CTGCGCGCGC GGACCTGCGC ATGCTGACCG GCCCCGACGC ACGCATGAGC GCCCTGCTGC GCGCCGACGG CCCCGACCTG CGGGCGGACG ATGCGGCGAC GCTGCTGGTC ATCAACCCCG ACCTGCACAC CGGCGTCGCG GCGCAGGCGG ACCGCTTCCT GCCCGGCGTG GCGGGCGGCT TCACGCGCGG CGTGGCGCTC GACCTGCTGA CCGAGCCGGC CGGCAGCCGC GACGAGGCCC TGCGCGCCAA GGCGCGCGCG CTGGCGGAGA TCGACCTGCC GCCGGGCGGC GTGCAGGCCT GGCGCGTGTT CCGCAGCCGT CCGGTCCGGT GGCGCCCCAT CGTGGCGCCC GGCGGGCAGC GGGCAATCCC GGGCGATGCA GACAGCGGGC GCGCCGGCAC CGCCGTGGCC GCGCCGCGCA TCGCCATCGA ACACGTGGCC CCTGCCGTGG ACGACGGCCG CTTTGCCGTG AAGCGGCTGG TGGGCGACGA CATCGTCGTC GAAGCCGACG TGCTGATGGA CGGGCACGAC CAGCTGGCTG TAGAACTGCA GTGGCGCGCG GACGATGACG ACGCCTGGCA GCGCGTGCCG ATGGTGCCGC TGGGCAACGA CCGCTGGCGC GGCGCCTTCC GGCCCGAACG GCTGGGGCGG CATGCCTATG CCGTGGCCGC CTGGCGCGAT GCCTTCGGCA CCTTCCGCGC CGAGCTGGAG ACGAAGCACG CAGCCGGCGT GGAGGTGGCC GTCGAGCTGG AAGAAGGCGC GCAGCTGGTG GCGCATGCGG CCGACCACGC GCCCAAGGAC GCCCCGGTGG GCGCACTGCA CCAGTTGGCG GACCTGCTCC GGGCCACCGC CCCGGACCCC GCGCACCGGC TCAAGCTGCT GCTGGACCCG GCCACCGCGC ACGTGATGGC GCAGGCCTCG CACTTCCGGC CGTTCCATGT GCGCAGCGCA CCGTATCCGC TCGACGTGGA GCGCAGCGGC GCCGCGTTCG CCAGCTGGTA CGAGCTGTTC CCGCGCTCGG CCAGCGGCGA CGCGCAGCGG CACGGCACCT TCCGCGACGT GGCGCGCCGG CTGGGGGTGA TCCGCGCGAT GGGCTTCGAC GTGCTGTACT TCCCGCCCAT CCACCCCATC GGGCGCACCC ACCGCAAGGG GCGCAACAAC AGCCTGCGCG CCGAGCCCGA CGACCCGGGC AGCCCCTACG CGATCGGCGC GGCGGAAGGC GGGCACGATG CCATCCACCC GCAGCTCGGC ACGCTGGACG ATTTCCGCCG GCTGCGCGAT GCCGCCCGCG GGCAGGGGCT GGAGTTGGCG CTCGACTTCG CCATCCAGTG CTCGCCCGAC CACCCCTGGC TGCGCGCGCA CCCGGGCTGG TTCGCCTGGC GCCCCGACGG CAGCGTCCGG TACGCCGAGA ACCCGCCCAA GAAATACGAA GACATCGTCA ACGTCGATTT CTACGCCGCG AGCGCCAAGC CCGCGCTGTG GCTCGCGCTG CGCGACGTGG TGATGTTCTG GGCCGACGAG GGCGTGCGGC TGTTCCGCGT CGACAATCCG CACACCAAGC CGCTGCCGTT CTGGGAATGG ATGATCGGCG AGGTGCGCGC GCGCTACCCC GATGCGATCT TCCTGTCGGA GGCGTTCACG CGGCCCAAGG TGATGTACCG GCTGGCCAAG GTGGGCTTCT CGCAGTCGTA CACCTACTTC ACGTGGCGCC ACGGCAAGCA GGAATTCATC GACTACCTGA CCGAGCTGAC CCGCACGCCG GTGCGCGAGT ATTTCCGGCC GCACTTCTTC GTCAACACGC CCGACATCAA TCCGGTGTTC CTGCAGACCT CGGGGCGGCC GGGCTTTCTG ATCCGCGCGG CGCTGGCGGC CACGCTCTCC GGGCTGTGGG GCGTCTATAA CGGATTCGAG CTGTGCGAGG GGCAGGCGCT GCCCGGCAAG GAGGAATACC TGGACGCCGA AAAGTACCAG CTGCGCGCGT GGGACCACGA CCGGCCGGGC AACATCGTCG CCGAGATCGC GCTGCTCAAC CGCATCCGCC GCGCCAATCC GGCGCTGCAT TCGCACCTGG GCGTGCAGTT CCAGCCGGCC TCGGGCGAGG GCATCCTGTA CTTCAGCAAA TCGACGCCGG CGCCGCTGCC GACCCACCCG GCCGAACTCG CCGATGCCGC GCCGGAGCGC TTCGGCGACA ACACGCTGCT GGTCGCCATC AGCCTCGACC CGCATCACCC GCAGGAGGCC GACATCGAGC TGCCGCTGTG GCAGTGGGGC CTGCCCGACC ACGGCGCGCT GATGGCGGAG AACCTCGTCG ACGGCGCGCG CTTCGTGTGG CGCGGCAAGC GGCAGCACGT GCGGCTGGCG CCCGAGCAAC CGTTCGCGAT CTGGCGCGTA CGACCCGCGC TGCCTTCGGA GGAGCAACCG TCATGA
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Protein sequence | MTDPKTFAAP ASRTPPATPP RAAEDTQQPA AAQTPTQAPP AATPHARPEA QWSAAAFTPA ICYLHPLQQG PLDQWGGLLD RIAALGFDHV LIAPPFAVGA GGNVFVTRDH ARLHAALGGG PAHAALGRLA DACRQRGLTL LMDLVIDRVA TDAPLRADHP GWFHCRAEHG DALDPRLPPS HLEVASFRHD DAHCAEAIGA WWMQQLRAWT ALGIGGFRCE APARLPAARW HPLIAATREG AGARPVRFLA WTPGLDGRAV EALADAGFDA TFSSLRWWDF RAGWMVEEHA RLAAVAPPIA TVEAPFGTRY GQAFGDAMTR ERAYRRMLDV ADVLGAGWLM PFGFERGALL PMLPDRGDPT DAQWIDAHAA FDLSDAVRDV NATLRAAQAA GTVAARADLR MLTGPDARMS ALLRADGPDL RADDAATLLV INPDLHTGVA AQADRFLPGV AGGFTRGVAL DLLTEPAGSR DEALRAKARA LAEIDLPPGG VQAWRVFRSR PVRWRPIVAP GGQRAIPGDA DSGRAGTAVA APRIAIEHVA PAVDDGRFAV KRLVGDDIVV EADVLMDGHD QLAVELQWRA DDDDAWQRVP MVPLGNDRWR GAFRPERLGR HAYAVAAWRD AFGTFRAELE TKHAAGVEVA VELEEGAQLV AHAADHAPKD APVGALHQLA DLLRATAPDP AHRLKLLLDP ATAHVMAQAS HFRPFHVRSA PYPLDVERSG AAFASWYELF PRSASGDAQR HGTFRDVARR LGVIRAMGFD VLYFPPIHPI GRTHRKGRNN SLRAEPDDPG SPYAIGAAEG GHDAIHPQLG TLDDFRRLRD AARGQGLELA LDFAIQCSPD HPWLRAHPGW FAWRPDGSVR YAENPPKKYE DIVNVDFYAA SAKPALWLAL RDVVMFWADE GVRLFRVDNP HTKPLPFWEW MIGEVRARYP DAIFLSEAFT RPKVMYRLAK VGFSQSYTYF TWRHGKQEFI DYLTELTRTP VREYFRPHFF VNTPDINPVF LQTSGRPGFL IRAALAATLS GLWGVYNGFE LCEGQALPGK EEYLDAEKYQ LRAWDHDRPG NIVAEIALLN RIRRANPALH SHLGVQFQPA SGEGILYFSK STPAPLPTHP AELADAAPER FGDNTLLVAI SLDPHHPQEA DIELPLWQWG LPDHGALMAE NLVDGARFVW RGKRQHVRLA PEQPFAIWRV RPALPSEEQP S
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