| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS03020 |
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| Symbol | RSp0103 |
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| ID | 1222506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 114723 |
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| End bp | 117380 |
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| Gene Length | 2658 bp |
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| Protein Length | 885 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637239962 |
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| Product | putative VGR-related protein |
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| Protein accession | NP_521664 |
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| Protein GI | 17548324 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.318268 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCGAAT CCGACCGAAC GGCACATTTG CACAACACCC TCTTTTTCCA ACAGAGCAAC
CGCTTGTTGG GCCTGTCGTT CCCAAAGGAC GACGCTCCCA CGGCCACCGA CCTGCGAGGC
CGCTCCGTCC CCGTGCAAAT GGTCGTCGAG CGCCTGGAAG CCCAGGAGGG CCTGGGCCAA
GACTTCCGGT TCGAACTGAC GCTGCTGGCC GACAGCGCCG GCCTCGTGCT GGCGGACATG
CTCGGCAAGC TGCTGGCGGT GTCCCTAGTC AAGCCGGACG GCACCCTGCG CTGGTTCACC
GGGCACGTGG CGGAATTCTC CCTGGTAGGC AGCGACCCCG GTGTGGCGAC CTACCGGGCG
GTGCTGCGGC CGTGGCTATG GTTTGCGCGG GCTCGGATCA ACGACCGCGT GTTCCGCGAC
CGGAGCCTGT ATCAGCAGAT CAGCGAAATC CTGCAAGACT ATGGAGCCTG GGCGCAATGG
CGCTGGGCCG TGGCCGGAGA GGATGCGCCC TTCACCATGG CCGTGCAGGG CGGCGGCCAG
GGCGAGAGCG ATCACAACTA CATCTACCGC AGACTGGAGG CGCGGGGCTG TATCAGCGGC
TACGAACACG ACGCGACCGG CCACCGGCTG GTCATCTTCG ACAGAAGCAG CCAGTGTCCG
CCCGTGGAGG GCGATCAGCG GATCCCCTTC CAAGCTGCGG GCGGGCCGCA GGAGGAAAAC
GCCATCCAGC GCTGGACACC GGTGCAGACG GCGGCAGCCG CGCTGTTCGC GGCGAGCGCG
TTCGACTTCA AGCACCCGCA GGCACGGCAC CAAGCGGAAT CGACGCAGCG CAAGCAGGGC
AGTGTCCCGG AACTGGAAGC GCACGAATAC GCGGGGCACT ACGGCTTCCC AAAAGAGGAC
CCCAGGGGCA TTGGGCTGCT GAACCTGCGC CGCGAGGAAA TCGAAGCGCA CGCTGAGCAA
TACCAAGCCG AAGGCAACAA CGCCAGCGTG GCGAGCGGCC TCTGGTTCGA GTTGTCCGGG
CACTTCAGCA ACACGGAGCG CGCGGAGGAC AACCAATACC TGATCGTGGA AGCCAGCCAC
AGCGCGAGCA ACAACTACCT TGCGGAACTC GGACGACAGG GCGGCCATGA GGCACCGCTG
TTTGCAGGCC GCAAGGGCGA ATACCGCAAC CGCTTCATCG CGATCAAGCG CGCGGTGCCC
TGGCGCCCCG GTCGGGGACG GAACAGCATC GATGTGAAGG TGGAGCGGCA CCAGAGCGCA
ACGGTGGTCG CCGCTGGCGG GCTGGGCGCG CTGGATGTGG ACGAACACGG CCGCGTCCTG
ATTCGGTTCC ACTGGGACCG GGAAGGCAAG TACAGCGCGC GCGTACGTGT GGCGAGCAAT
TGGGCCGGTG GCGAAACTGG CATGGTGTCG TGGCCGCGCG CGGGCAGTGA AGTGCTGGTG
ATCGCGCTGG ACGGCAACCC AGACCACTTC CTCATCATCG GCGGCGTCCA CAACGCTCAT
CGCATGCCGC CGTGGCAGTT GCCGGCGCAG GGGGCGCTGA TGGGCATCCG CAGCCGGGAA
CTGACCCCGG ACGGCGGTAA CGACCCCGGA GGCAGCAGTA ACCACCTCGT CCTAGACGAC
ACGGCGGGCA GGATTCAGGC GCAGCTCAAG AGCGATCATC TGAACAGTTC GTTGAGCCTG
GGGCACATCA CGCGGATCGA CGGCACGGCA GGCCGACAGA ACCCGCGCGG CCAAGGCTTC
GCGCTGGACA CCGAGGGGCA CGGCGCGAGC CGCGCCGCCG CAGGGATACA GATCACCACG
GAAGCCTTGC CCAGTGGACA GGGCAACATG ATGGACGTGG GTGCACCGAT GGCACGACTG
ACGGTGGCCC GCGAGATGCA CGAACGGTTA GCGGAGGCGG CGCTCACGGC AGGGGTGCAG
GCGGCGGACG ATCAAGGCGA TGTGGTCAAG CAACTACACC AGCAGAATGC CGACCTGAAA
GGCAACGGTG GCGATCCGGC GCAGGGGCAA TTCCCCGAGT TCCAGCAACC GCACCTGATG
CTGGCCAGCC CGGCCGGCAT CGAGAGCAGC ACGGCGGGCA GTACGCACCA GCAGAGCAAC
GCGCATCACG CGATCACCAG CGGCGGGCAC GCCAGCATTG CCACCGGGCG CAGCTTCCTC
GCCAGTGCCA AGGATGCGAT CCGGCTGTTT GCCTACCGGC TTGGCCTCAA GCTGGTGGCC
GCCAGCGGCG ACATCGACAT GCAGGCGCTC AAGAACGGCA TCAACATCCT GGCGAAGCTG
GAGATCAAGA TGGAGGGCAA GCGGGTGGAG ATTAACGGAA CGGACGGGGT GCGCATCAAC
GGAGGCGGCA GCTATATCGA CGTGAGCCAG TCGGGGATTA CGCACGGGAC CAACGGCGCG
TTCCAAGTGC ATTCGGCTGA CTATTCGTTC TCGGGGCCGG ATAGCCGGCC GGTGGTGCCG
CATGCGGTTA CGTCAGCGCT GAAGCCTGGT GAGCCCGTAC CCGTAGTGGA CATGCTGGGC
AACAAGGTGC CGGATAGCCA TGTCATCGTG CGGCCCGGTC AGGATGAAGC GCGCACAGCC
ATTGAAGGCG GCAAGATCGA CCCTGACGCG ATGCTCAATC ATCATGTGCT GCGGCGCTGG
CGACGCCCGC AGGGCTGA
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| Protein sequence | MAESDRTAHL HNTLFFQQSN RLLGLSFPKD DAPTATDLRG RSVPVQMVVE RLEAQEGLGQ
DFRFELTLLA DSAGLVLADM LGKLLAVSLV KPDGTLRWFT GHVAEFSLVG SDPGVATYRA
VLRPWLWFAR ARINDRVFRD RSLYQQISEI LQDYGAWAQW RWAVAGEDAP FTMAVQGGGQ
GESDHNYIYR RLEARGCISG YEHDATGHRL VIFDRSSQCP PVEGDQRIPF QAAGGPQEEN
AIQRWTPVQT AAAALFAASA FDFKHPQARH QAESTQRKQG SVPELEAHEY AGHYGFPKED
PRGIGLLNLR REEIEAHAEQ YQAEGNNASV ASGLWFELSG HFSNTERAED NQYLIVEASH
SASNNYLAEL GRQGGHEAPL FAGRKGEYRN RFIAIKRAVP WRPGRGRNSI DVKVERHQSA
TVVAAGGLGA LDVDEHGRVL IRFHWDREGK YSARVRVASN WAGGETGMVS WPRAGSEVLV
IALDGNPDHF LIIGGVHNAH RMPPWQLPAQ GALMGIRSRE LTPDGGNDPG GSSNHLVLDD
TAGRIQAQLK SDHLNSSLSL GHITRIDGTA GRQNPRGQGF ALDTEGHGAS RAAAGIQITT
EALPSGQGNM MDVGAPMARL TVAREMHERL AEAALTAGVQ AADDQGDVVK QLHQQNADLK
GNGGDPAQGQ FPEFQQPHLM LASPAGIESS TAGSTHQQSN AHHAITSGGH ASIATGRSFL
ASAKDAIRLF AYRLGLKLVA ASGDIDMQAL KNGINILAKL EIKMEGKRVE INGTDGVRIN
GGGSYIDVSQ SGITHGTNGA FQVHSADYSF SGPDSRPVVP HAVTSALKPG EPVPVVDMLG
NKVPDSHVIV RPGQDEARTA IEGGKIDPDA MLNHHVLRRW RRPQG
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