| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS02177 |
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| Symbol | RSp1620 |
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| ID | 1223932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 2036953 |
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| End bp | 2040882 |
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| Gene Length | 3930 bp |
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| Protein Length | 1309 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637241483 |
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| Product | putative hemagglutinin-related protein |
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| Protein accession | NP_523179 |
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| Protein GI | 17549839 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport
[W] Extracellular structures |
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| COG ID | [COG5295] Autotransporter adhesin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.732104 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTTTTCA GCGCCATGCC GCAATACGCT TGCGCAGAAA TGTTGCTGCA AAACGATCCG
GGAACGAATT GTGGAAGCGT GGGTGATGCA TATGCCTGGG CGCGAGGCGA TGGGTATTCG
GGTTGTAAGG TCGGTTACGA AGCCGCAAAA AATTTGGCAA AGGGCACAGC ATTCGGCAAT
AGCCTGGGTC AACTATCGCC TGGTACGAAC ATTCTCGTCT ACGGGTCGAC GCTCCGTGCT
GGTATGAATG ACGAAGTGAC ACCCCTCGAT TCGATGAATA TCGGTGGCCA TCTCGACGTA
TGGGGAGCCA GCGGCTTTCA CGGCGGTGTC GATATGAATA ATTCCGCCAT CAAAAACCTT
GCTGACGGCA CGCTGTCGGC CACCAGCACC GAGGCGGTGA CTGGCAGGCA ACTGAACGCC
ACCAACACGA ACATCACCAA TCTGCAGAAC AGCATCAAGA GCATCAGCAG TTCGGCGAGC
CTGGTGCAGC AGTCGGCCGC GGGCAAGGAC ATCACAGTGG CCAAGGACCT GGACGGTGAC
GCGGTGGACT TCAGCGGCAA GAAGCTGAGT GACAGCACGA CGTTTTCGCG CAAGCTGACG
GGTGTGGCGG AGGGGACGTT GTCGGCGACG AGCACGGATG CGGTGAGCGG CAAGCAACTC
TATACGACCA ACCAGAACCT GAGCACGACC AACCAGAATC TGGCGGACAC GAACAAGAGC
CTGGCCGAGA CGAACAAGAA CGTGTCGGCG ACCACGACCA ACATCACGAA CCTGCAGAAC
ACCATCAAGA ACATCAGCGG CGGCTCGGCG GGTCTGGTGC AGCAATCGGC CGCGGGCAAG
GACATCACGG TGGCCAAGGA CCTGGACGGT GAGGCGGTGG ACTTCAGCGG CAAGAAGCTG
AGCGACAGCA CGACGTTCTC GCGCAAGCTG ACGGGTGTGG CGGAGGGGAC GCTGTCGGCG
ACGAGCACGG ATGCGGTGAG CGGCAAGCAG CTCTATACGA CGAACCAGAA TCTGGCGAGT
ACCAACAAGG ACCTGGCCAA TACCAACACG CGCCTGACGA CGGCCGAGGG CAATCTGTCG
TCGAACACGA CGAGCATCAC GAACCTGCAG AACACCATCA AGAACATCAG CGGCGGCTCG
GCGGGTCTGG TGCAGCAATC GGCTGCGGGC AAGGACATCA CCGTGGCCAA GGACCTGGAC
GGTGACGCGG TGGACTTCAG CGGCAAGAAG CTGAGCGACA GCACGACGTT CTCGCGCAAG
CTGACGGGTG TTGCGGAGGG GACGTTGTCG GCGACGAGTA CCGATGCGGT GAGCGGCAGG
CAGCTCTATA CGACCAACCA GAACCTGAGC ACGACGAACC AGAATCTGGC GGACACGAAC
AAGAGCCTGG CCGAGACGAA CAAGAACGTG TCGGCGACCA CGACCAACAT CACGAACCTG
CAGAACACGG TGAACAACAT CAGCAGCGGT TCGGCGGGTC TGGTGCAGCA ATCGGCAGCG
GGCAAGGACA TCACAGTGGC CAAGGACCTG GACGGTGACG CGGTGGACTT CAGCGGCAAG
AAGCTGAGTG ACAGCACGAC GTTCTCGCGC AAGCTGACGG GTGTGGCGGA GGGGACGCTG
TCGGCGACGA GCACGGATGC GGTGAGCGGC AAGCAGCTCT ATACGACCAA CCAGAACCTG
AGCACGACCA ACCAGAATCT GGCGGACACG AACAAGAGCC TGGCCGAGAC GAACAAGAAC
GTGTCGGCGA CCACGACCAA CATCACGAAC CTGCAGAACA CGGTGAACAA CATCAGCAGC
GGTTCGGCGG GTCTGGTGCA GCAGTCGGCC GCGGGCAAGG ACATCACGGT GGCCAAGAAC
CTGGACGGTG ACGCGGTGGA CTTCAGCGGC AAGAAGCTGA GTGACAGCAC GACGTTTTCG
CGCAAGCTGA CGGGTGTGGC GGAGGGGACG CTGTCGGCGA CGAGCACGGA TGCGGTGAGC
GGCAAGCAGC TCTATACGAC CAACCAGAAT CTGGCGAGTA CCAACAAGGA CCTGGCCAAT
ACCAACACGC GCCTGACGAC GGCCGAGGGC AATCTGTCGT CGAACACGAC GAGCATCACG
AACCTGCAGA ACACCATCAA GAACATCAGC GGCGGCTCGG CGGGTCTGGT GCAGCAATCG
GCTGCGGGCA AGGACATCAC CGTGGCCAAG GACCTGGACG GTGACGCGGT GGACTTCAGC
GGCAAGAACC TGAGCGACAG CACGACGTTC TCGCGCAAGC TGACGGGTGT TGCGGAGGGG
ACGTTGTCGG CGACGAGTAC CGATGCGGTG AGCGGCAAGC AGCTCTATAC GACCAACCAG
AACCTGAGCA CGACGAACCA GAATCTGGCG GACACGAACA AGAGCCTGGC CAAGACGAAC
AACAACGTGT CGGCGACCAC GACCAACATC ACGAACCTGC AGAACACGGT GAACAACATC
AGCAGCGGTT CGGCGGGTCT GGTGCAGCAG TCGGCAGCGG GCAAGGACAT TACGGTGGCC
AAGGACCTGG ACGGTGACGC GGTGGACTTC AGCGGCAAGA AGCTGAGCGA CAGCACGACG
TTCTCGCGCA AGCTGACGGG TGTGGCGGAG GGGACGCTGT CGGCGACGAG CACGGATGCG
GTGAGCGGCA AGCAGCTCTA TGCGACGAAC CAGAATGTGT CGAAGTTGTC GGCGAACGTC
ACGGACGTGA GTGATAGCGT CACCAACATC AAGAACACGA TGAACACCAT CGTGAACGGC
GGCGGGCTCA AGTACTTCCA CGCGAACTCG ACGCTGGACG ATGCGCAGGC GATGGGCCTC
GAGTCGATCG CGTTCGGCGG CGCAGCCGTC GCGGCCGGTA TGAACTCGAT GGCGATGGGC
GGCAATGCCC GGGCGGTGGC GGGCAACGCT GTGGCCTTGG GCGCGGGTTC GGTGGCGGAC
CGCGCGAACA CGGTGTCGGT GGGCTCGGCG GGCAAGGAGC GCCAGATCAC CAACGTGGCG
GCCGGTACGG CGGACACGGA TGCCGTGAAC GTTGCCCAGC TGAAGGCGGC CGGCATCATC
AACGGCAGCG GCAGGACCAA CGCCACGGTG ACGTACGGCA CCAACGCAGA CGGCTCGGCG
GACTACGGCA ACGTGACGCT GGGCGGCGGC AACGCGCCGG CCGGCACGGC GATCCACAAC
GTCGCGGCCG GCACGGCCGA GACCGACGCG GTGAACGTCA GGCAGATGAA CGCGGCCATT
GCCAGCGTGC AGAAGGTGAG CAACACCAAC GACCCGATGT TCGCGGCGGA TGGCGACCGC
GCTGTCAAGC GCGCGAGCGC CAAGGGCACG CATGCCACGG CGATGGGTGC CGCGGCCAGC
GCGGGCGGCG ACCAGTCGGT CGCGACGGGC CACAACGCGC AGTCGGGCGG CGACAGCTCG
GTCGCGATGG GCGCGAATGC GAAGGCGACG GCGAATCATG CGGTTGCCGT GGGCTCGGGT
TCGGTAGCGA ACCGCGCGAA CACGATGTCG GTGGGCTCGG CGGGCAGCGA GCGCCAGATC
ACCAATGTTG CGGCCGGTGT GCAGGGTACC GATGCGGTCA ACGTGAGCCA GCTGAGCCAG
GCGGTCTATG CGGCCGTCGG CGATCTGCCG GCGGGCACGA CGGCCAGGCA GTACACGGAT
GAGCAGATCG GCATGGTGCG GCAGGGGATC AGCCAGGTGG CGCGCGGCGC TTACAGCGGT
ATCGCGGCGG CGACCGCGCT GACGATGATT CCGGACGTCG ATCAGGGCAA GTCGATCGCG
ATCGGTATCG GCAGCGCGAC CTACAAGGGC TATCAGGCGG TTGCGCTGGG CGCCTCGGCA
CGCATCTCGC ACAACCTGAA GGCCAAGATG GGCGTGGGCT ACAGCAGCGA AGGCACGACG
GTCGGCATGG GCGCGTCGTA TCAGTGGTAA
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| Protein sequence | MVFSAMPQYA CAEMLLQNDP GTNCGSVGDA YAWARGDGYS GCKVGYEAAK NLAKGTAFGN
SLGQLSPGTN ILVYGSTLRA GMNDEVTPLD SMNIGGHLDV WGASGFHGGV DMNNSAIKNL
ADGTLSATST EAVTGRQLNA TNTNITNLQN SIKSISSSAS LVQQSAAGKD ITVAKDLDGD
AVDFSGKKLS DSTTFSRKLT GVAEGTLSAT STDAVSGKQL YTTNQNLSTT NQNLADTNKS
LAETNKNVSA TTTNITNLQN TIKNISGGSA GLVQQSAAGK DITVAKDLDG EAVDFSGKKL
SDSTTFSRKL TGVAEGTLSA TSTDAVSGKQ LYTTNQNLAS TNKDLANTNT RLTTAEGNLS
SNTTSITNLQ NTIKNISGGS AGLVQQSAAG KDITVAKDLD GDAVDFSGKK LSDSTTFSRK
LTGVAEGTLS ATSTDAVSGR QLYTTNQNLS TTNQNLADTN KSLAETNKNV SATTTNITNL
QNTVNNISSG SAGLVQQSAA GKDITVAKDL DGDAVDFSGK KLSDSTTFSR KLTGVAEGTL
SATSTDAVSG KQLYTTNQNL STTNQNLADT NKSLAETNKN VSATTTNITN LQNTVNNISS
GSAGLVQQSA AGKDITVAKN LDGDAVDFSG KKLSDSTTFS RKLTGVAEGT LSATSTDAVS
GKQLYTTNQN LASTNKDLAN TNTRLTTAEG NLSSNTTSIT NLQNTIKNIS GGSAGLVQQS
AAGKDITVAK DLDGDAVDFS GKNLSDSTTF SRKLTGVAEG TLSATSTDAV SGKQLYTTNQ
NLSTTNQNLA DTNKSLAKTN NNVSATTTNI TNLQNTVNNI SSGSAGLVQQ SAAGKDITVA
KDLDGDAVDF SGKKLSDSTT FSRKLTGVAE GTLSATSTDA VSGKQLYATN QNVSKLSANV
TDVSDSVTNI KNTMNTIVNG GGLKYFHANS TLDDAQAMGL ESIAFGGAAV AAGMNSMAMG
GNARAVAGNA VALGAGSVAD RANTVSVGSA GKERQITNVA AGTADTDAVN VAQLKAAGII
NGSGRTNATV TYGTNADGSA DYGNVTLGGG NAPAGTAIHN VAAGTAETDA VNVRQMNAAI
ASVQKVSNTN DPMFAADGDR AVKRASAKGT HATAMGAAAS AGGDQSVATG HNAQSGGDSS
VAMGANAKAT ANHAVAVGSG SVANRANTMS VGSAGSERQI TNVAAGVQGT DAVNVSQLSQ
AVYAAVGDLP AGTTARQYTD EQIGMVRQGI SQVARGAYSG IAAATALTMI PDVDQGKSIA
IGIGSATYKG YQAVALGASA RISHNLKAKM GVGYSSEGTT VGMGASYQW
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