| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4300 |
|---|
| Symbol | |
|---|
| ID | 4024824 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 4763521 |
|---|
| End bp | 4766484 |
|---|
| Gene Length | 2964 bp |
|---|
| Protein Length | 987 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637964509 |
|---|
| Product | Outer membrane autotransporter barrel |
|---|
| Protein accession | YP_571418 |
|---|
| Protein GI | 91978759 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
|---|
| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.359518 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTCA GAGCGGATGA TCGGACGATC AGGCGGTTGG CGGCCCCTTG CGGATCGGAT
GCCGACGTTC CTTCCGGCAA GCGCATCCGC CGCGTCGTGC TCGGGACAAC AGCGCTTGTC
GGCTTTTCGA TCTCCGTCGC GGCGGGGCTT CCCGGAATCA TTCTCCTGAG TTCACTCGCC
GCGACCTCGG CGCTTGCCGA TGGTGGGGCT GGCAGCGCTG GCTATGCATA CGGCGGTGTT
GGGGGGGCCG ATAGCGCCCC GGGCATTGGC GGTCTTGGTG GCAATGCGCC AGTCGCCCCC
GGAGGCGGCA GCGGTGGCGG TGGTGGCGCG GGCGCTACGG GTGGAGCAGG CGGTAACGGC
GACGCCTGGA CAGGCGTCGC GGGTCTTGGA GGCGCGGGAG GTGTCGCGGC CGGCTCCGCT
GGGCAGGTCG GAGGCAATGG CACCCCATCC GGTGGTCAGG CGGGCGGAGG CGGAGGCGGA
GGCGGCGCTC ATGGGTACGT GGGCGCGACG TTACCGGTAG TCCTCTCAAT CGGCGGAAAT
GGCGGCAACG GGGGAGTTGG GACCAACGTT TCTTCCTACG GCGATGGCGG CGGCGGTGGC
GCCGGCGGGT ATGGCGCCGT TGTCACCGGC GGCGGCGGCG GCACGCTGAC TTCTACGGTG
ACCGGCGGAA ACGGCGGAAA CGGCGGACTG GGCTTTCTCT GGGGAGACGG CGGAACGGGC
GGCATCGGCC TGCACTACTC CGGTGGCGCC TCATTCACCG CAAACGCGGT CGTAAGTGGT
GGCCAAGGCG GCACCGGTGC GAACGGCGGC GCTGGCGGCG CTGGTATCTA TATCGCGGCC
GGAAGTACGG GCATATTCAC TGCAAACGCG GTCATCACTG GCGGCAACGG TGGCAATGGC
GGCGTCACCT CCGGTGTTGG AGGTGTTGGC GTCTATCTTG CTGCCGGAAG TACAATTATC
AATGCCGGCA CAATCAGCGG GGGCCTCTCC GGCGATGGCG TAACTCGCGC CAACGCGATC
ACCTTTGCCG GCGGGATCAA TATCCTCGAG CTGCAGGCCG GCTCGCACAT CATCGGGAAC
GTCGTGGCCT TCGGCGGCGC CGACACGCTG CGGCTCGGCG GCGCCGGCAA TGCCAGCTTC
GACGTCGCGC AGATCGGCGC CGCCGCTCAG TATCAGAATT TCGGCGTGTT CGAGAAAACC
GGCGTGAGCG TCTGGTCCCT GACCGGCAAC ACCAGCGAGG CGATGCCCTG GGCGGTGAAT
GCCGGCACTC TCGCGGTGAA CGCCGCGATG GCGAATGCGA CCATGACCGT GAACAATGGC
GGCACCCTTG CCGGCGTGGG GACCGTGGGC GCGGTGACCG TGGCCAATGG CGGCACGCTC
GCCCCCGGCA ATTCGGTCGG GACCATCACG GTCTCGGGCA ATCTGACCTT CGGCGCCGGC
GGCTTCTATG CCGTCGACGT CTCGCCGTCG GCCGCCGATC GCACCAATGT CACCGGCACC
GCGACGCTCG GGGGCGCCAC GGTGAACGCG ATCTTCACGG GCGGAGGCTA TGTCGAGCGG
CAGTACACCA TCGTCAATGC CGCGGGCGGC ATCGTCGGCA GTTTCAGCAC GCTTGCGATG
AGCAATCTGC CGTCGGGCTT CAAGTCCAGC CTCGGCTATG ACCTTCACAA CGCCTATCTC
AATTTGGTGC TCGATCTGAC ACCGACACCT ACGCCCACAC CCACGCCTTC ACCTACACCT
GGCCCTGCAC CCACCCCCGC ACCCGCCCCG GCGCCGCTGC CGATCAACAG CGGCCTCAAC
GTCAACCAGA CCCGGACCGC CAATGCGCTG AGCGATTACT TCGCCCGGGT CGGACGGATT
CCGATCGTGT TCGGCGCGTT GACGCCGACC GGGCTCGGCA TGGTGGCGGG CGAGGTTGCC
ACGGCGACGC AGCAAACCAC CTTCGACGCC ATGGACCTGT TCTTGGGATT GCTGACCGAT
CCGTTCTCGG CGGGACGTAT GCCCGACATG CCGGGCGGCG CGTCGCACTT CGCCGACGCC
TCGGCCGGAC GAGGCCCCGC GCGCGATGCC TATGCGATGA TCACCAAGGC GAGTTGGCGC
GCGCCGCTGG AAGCCCGCTG GAATGTCTGG GCCGCCGGCT TTGGCGGCTC GCAGACCACC
GGCGGCAACG CCACGCTCGG GAGCAATACG GCGACCAGCC GCATCTATGG AACGGCCGTT
GGGGCTGACT ACTGGCTGTC GCCCTACACC GTGGCCGGCT TCGCGCTGGC GGGCGGCGGC
ACCAGTTTCG GTCTCGCCAA TGGGCTGGGC GCGGGCAACT CGGATTTGTT TCAGGCCGGC
GGGTTTGTTC GTCACACCGT GGGCGCGACC TATCTGACGG CGGCCGCCGC CTATGGCTGG
CAGGACATCA CCACCGATCG CATGGTCGGC ATCGCCGGAT TGAATCAGTT CCGCGCGCAT
TTCAACGCCA ACGCGTTTTC CGGACGGCTC GAGGGCGGCC ATCGCATCGT CGCGCCGCTG
TTCGGCGGCG TCGGGTTGAC GCCCTACGCC GCCATCCAGG TCACGGCGTT CGAGCTGCCG
GCCTATGCGG AGCAGGTCCT GGCCGGCGTC GACACCTTCG CGTTGAGTTA CGGCGCCAAG
GTCGTCACCG CTACGCGCAG CGAGCTTGGG CTGCGCTCCG ACATATCCTT CGCGCTGACC
GATGCGACCC TGACGCTGCG CGGTCGCGCC GCCTGGGCGC ACGATTTCAA CACCGAACGG
TCGGCGCTGG CGACCTTCCA GGTGCTGCCG GGCGCATCCT TCCTGGTCAA CGGCGCCGCG
CAGGCCCGCG ACGCCGCACG CGTCACCGCA TCCGCGGAAA CCAAATGGCT GAACGGCTGG
TCCGTCGCCG GCGCCTTCGA AGGCGAGTTC TCCAACGTCA CGCAGAGCTA CGCCGGCAAG
GGCGTGGTGC GATACGCGTG GTGA
|
|---|
| Protein sequence | MTFRADDRTI RRLAAPCGSD ADVPSGKRIR RVVLGTTALV GFSISVAAGL PGIILLSSLA
ATSALADGGA GSAGYAYGGV GGADSAPGIG GLGGNAPVAP GGGSGGGGGA GATGGAGGNG
DAWTGVAGLG GAGGVAAGSA GQVGGNGTPS GGQAGGGGGG GGAHGYVGAT LPVVLSIGGN
GGNGGVGTNV SSYGDGGGGG AGGYGAVVTG GGGGTLTSTV TGGNGGNGGL GFLWGDGGTG
GIGLHYSGGA SFTANAVVSG GQGGTGANGG AGGAGIYIAA GSTGIFTANA VITGGNGGNG
GVTSGVGGVG VYLAAGSTII NAGTISGGLS GDGVTRANAI TFAGGINILE LQAGSHIIGN
VVAFGGADTL RLGGAGNASF DVAQIGAAAQ YQNFGVFEKT GVSVWSLTGN TSEAMPWAVN
AGTLAVNAAM ANATMTVNNG GTLAGVGTVG AVTVANGGTL APGNSVGTIT VSGNLTFGAG
GFYAVDVSPS AADRTNVTGT ATLGGATVNA IFTGGGYVER QYTIVNAAGG IVGSFSTLAM
SNLPSGFKSS LGYDLHNAYL NLVLDLTPTP TPTPTPSPTP GPAPTPAPAP APLPINSGLN
VNQTRTANAL SDYFARVGRI PIVFGALTPT GLGMVAGEVA TATQQTTFDA MDLFLGLLTD
PFSAGRMPDM PGGASHFADA SAGRGPARDA YAMITKASWR APLEARWNVW AAGFGGSQTT
GGNATLGSNT ATSRIYGTAV GADYWLSPYT VAGFALAGGG TSFGLANGLG AGNSDLFQAG
GFVRHTVGAT YLTAAAAYGW QDITTDRMVG IAGLNQFRAH FNANAFSGRL EGGHRIVAPL
FGGVGLTPYA AIQVTAFELP AYAEQVLAGV DTFALSYGAK VVTATRSELG LRSDISFALT
DATLTLRGRA AWAHDFNTER SALATFQVLP GASFLVNGAA QARDAARVTA SAETKWLNGW
SVAGAFEGEF SNVTQSYAGK GVVRYAW
|
|---|
| |