Gene RPD_4294 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_4294 
Symbol 
ID4024817 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4755467 
End bp4756867 
Gene Length1401 bp 
Protein Length466 aa 
Translation table11 
GC content67% 
IMG OID637964502 
Productamidase 
Protein accessionYP_571412 
Protein GI91978753 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00407497 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGCTACGA CGGATCTTCA TTATCGCGGG CTGGTGGAAG TCGGACGCGA GATCCAGGCG 
AACAAGCTGT CTCCGGTCGA AGTGACGAAA GCGATGCTGC AACGCATCGA GAAGCTCGAC
GGCAAGCTCA AGAGCTACGC GTATGTCACG CCGGAGCTCG CGCTCGAAGA GGCCGCCTCG
GCCGAGAAGG AAATCGCGGC CGGCAAAGTC AAAGGCCCGC TCCACGGCGT GCCGATCGCG
GTCAAGGATC TGTGCTGGGT CAAGGGCGTC CCCGCGGCTC ACGGCATGAC GATTCATCGC
GACTATCGCC CCAGCGAGGA CGCGACGGTC GTCGCCCGTC TCAAGAATGC CGGCGCGATC
ATCCTCGGCA AGCTGCAACA GACCGAAGGC GCCTACGCGG ATCATCATCC GAAGATCGAT
CCGCCGAAGA ATCCCTGGAA TGACGAGTTG TGGTCGGGCG TATCTTCGAG CGGCTCGGGC
TCCGCCACCG CGGCGGGGCT GTGCTTCGGA TCGCTCGGAA CCGACACCGG CGGTTCGATC
CGGTTTCCCT CGGCGGCCAA TGGCGTCACG GGATTGAAGC CGACCTGGGG CCGGGTGAGC
CGCTACGGCG CTTACGAACT CGCGGCGACG CTCGATCACA TCGGCCCGAT GGCGCGCAGC
GCGATCGATT GCGGCGCGAT GCTGAGCGTG ATCGCGGGCG CCGATCCGAA GGACACGACA
GCGGTGCCGC TGCCGGTGCC GAACTACGTC GCGAATCTGC CGGGCGATCT GAAGGGCATG
GTGATCGGGG TCGACCGTCG CTGGACCAGC GAGGGCACCG ACGAAGCGGC CACCAAGGTG
TTCGAGGACG CGCTGCGCGT CGCCAAGGAC CTCGGCGCGA CCATCACCGA GATCGTCTTC
CCGGACGCGC AGGCGGTGAC CGACGATTGG TTTCCGCTCT GCGGCATCGA AACGGCGGTT
GCGCACGAGC ACACCTATCC GTCCCGCAAG GACGAATACG GGCCCGGGCT CGCAGGATTG
ATCGAGCTTG GCCGTCAGCA ATCCGGGATG GACTATCAGA AGATCGTGCT GCGGCGGGAA
GCCTTCCGCG GCGCCGTCCG CGCGGTGTTC GAAACGGTCG ATCTGATCGC GATCCCCGCG
CAGGCTTCTG CCGCGCCGAC CCTCGCCAGG ATGGCCGCGC TCGGCGAGGA CGCCTCGCTG
ATCGGCGGGC TGCTGCGCTT CACCTGTCCG TTCGACATGA CCGGAAGCCC GACGATCACG
CTGCCGGGCG GCTTCGCGCC GAATGGTGGG CCGATCGGCT TCCAGTTCGT CGGTCGTCAC
TTCGACGAGG CGCGTCTCGT GGCCGCGGGC GATGCGTTCC AGCGCGTCAC CGACTGGCAC
ACGCGCCACC CCGCCCTCTG A
 
Protein sequence
MATTDLHYRG LVEVGREIQA NKLSPVEVTK AMLQRIEKLD GKLKSYAYVT PELALEEAAS 
AEKEIAAGKV KGPLHGVPIA VKDLCWVKGV PAAHGMTIHR DYRPSEDATV VARLKNAGAI
ILGKLQQTEG AYADHHPKID PPKNPWNDEL WSGVSSSGSG SATAAGLCFG SLGTDTGGSI
RFPSAANGVT GLKPTWGRVS RYGAYELAAT LDHIGPMARS AIDCGAMLSV IAGADPKDTT
AVPLPVPNYV ANLPGDLKGM VIGVDRRWTS EGTDEAATKV FEDALRVAKD LGATITEIVF
PDAQAVTDDW FPLCGIETAV AHEHTYPSRK DEYGPGLAGL IELGRQQSGM DYQKIVLRRE
AFRGAVRAVF ETVDLIAIPA QASAAPTLAR MAALGEDASL IGGLLRFTCP FDMTGSPTIT
LPGGFAPNGG PIGFQFVGRH FDEARLVAAG DAFQRVTDWH TRHPAL