Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_4288 |
Symbol | |
ID | 4024811 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 4749678 |
End bp | 4750403 |
Gene Length | 726 bp |
Protein Length | 241 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637964496 |
Product | ABC transporter related |
Protein accession | YP_571406 |
Protein GI | 91978747 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
TIGRFAM ID | [TIGR03410] urea ABC transporter, ATP-binding protein UrtE |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0030977 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCTCACTG AACGATTGCC CACGGATCGC ATTCTGGAGG TCTCGGGACT GTGGGCGGGG TATGGCGCCA CGCCGATCCT GCAGGGCGTC GACATGACGA TCATGCGCGG CGAGATCGTC GGCGTGATCG GTCGCAACGG CGTCGGCAAG TCGACGCTGA TGCGCTGCAT CATCGGCCTG CTCGACTCCT GGCGCGGCAC CATCACCTTT ATGGACCGCG ACGTTACACC GTTGCAGGCC GACGCGCGGG CGCGCGCCGG CTTCGGCTAC ATCCCGCAGG GCCGCGACGT GTTTGCGCAA ATGAGCGTCG AGGAGAACCT GCAGGTCGGC GAACTGATCG GCGGGCCGAG GGGCAAGAAG CTGCCCGAGC TGGTCTACGA GTATTTCCCG CGCCTCAAGG AGCGTCGCAA GCAGATTGCG GGCACGATGT CCGGCGGTGA GCAGCAGCAG CTCGCGATCG GGCGCGCGCT GATCGGCAAT CCGGCGTTGA TGATCCTCGA CGAGCCGTCC GAGGGCATTC AACCGTCGAT CGTGCAGCAC ATCTGCGAGG CGTTGAAATC GTTCCGGACC GAACTCGGCA CCACGATCAT TTTTGTCGAA CAGAATCTGG ACACCATCCT GGCGATCGCG CAGCGCTGCT ACATCATGGA AAAGGGCCGG ATCACGCATT CCTTGGTCGG CGACGACGTC AACGAAGACA AGGTGCGCGC GCAACTGCTG TTGTGA
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Protein sequence | MLTERLPTDR ILEVSGLWAG YGATPILQGV DMTIMRGEIV GVIGRNGVGK STLMRCIIGL LDSWRGTITF MDRDVTPLQA DARARAGFGY IPQGRDVFAQ MSVEENLQVG ELIGGPRGKK LPELVYEYFP RLKERRKQIA GTMSGGEQQQ LAIGRALIGN PALMILDEPS EGIQPSIVQH ICEALKSFRT ELGTTIIFVE QNLDTILAIA QRCYIMEKGR ITHSLVGDDV NEDKVRAQLL L
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