Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_4237 |
Symbol | |
ID | 4024758 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 4704959 |
End bp | 4705705 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637964443 |
Product | HAD family hydrolase |
Protein accession | YP_571355 |
Protein GI | 91978696 |
COG category | [R] General function prediction only |
COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00960992 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.35717 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTACCAT CAGCTATGAT CTTCGACGTC GATGGGACGC TTTCGGAGAC GGAAGAGCTT CATCGGCAGG CCTTCAACGA AATCTTCGCC GCTGAGAAGC TGCCATGGCA TTGGGACGCA GCCGACTATC GGCGGCTGCT CGACGTCGCC GGCGGCAAGG AGCGGATCGC ACATTTCCTG GCGGCGCAGC CCGAAGGCGC AGACCGCGCG GTGGGCCGGA TCGCCGAACT ACATGCCGCC AAGACTGCGC GCTACAGTGC GCTGATCGCA GCCGGCGCGG CGCTGCGTCC CGGCGTGGAG CGGCTGATCC GCGAGGCGAA GGCGGCCGGC GTGCGGCTGG CAATCGCCAC CACTACCAGC CTGCCGAATG TCGAGGCGCT GCTCGGCGCC TCACTCGGGC GCGAAGCGAT CGCGCTGTTC GAAGTGATCG GCGCCGGCGA CGTCGTGCCG GCCAAGAAGC CTGCTCCGGA CATCTATCAA TATGTGCTCG AGCGGCTGGC GCTGCCGGCG TCGGCTTGCG TTGCCTTCGA GGATTCCACC AACGGCGTCC GCGCGGCGCG CGGCGCCGGC CTTGCCACCA TCGTGACGCA GGGGATGTAT ACCGAGGGCG ACGATTTCGC GGGCGCGCTG GCTGTGCTGA GCGATCTCGG CGAGCCTGAC GCGCCGTACC GGCATCTCGC AGGCGCCGGG GCCGGCGACA GGTTGGTGAC GCTCGACGCG CTCGGGCGCT GGCTCGAAGC CGCCTGA
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Protein sequence | MLPSAMIFDV DGTLSETEEL HRQAFNEIFA AEKLPWHWDA ADYRRLLDVA GGKERIAHFL AAQPEGADRA VGRIAELHAA KTARYSALIA AGAALRPGVE RLIREAKAAG VRLAIATTTS LPNVEALLGA SLGREAIALF EVIGAGDVVP AKKPAPDIYQ YVLERLALPA SACVAFEDST NGVRAARGAG LATIVTQGMY TEGDDFAGAL AVLSDLGEPD APYRHLAGAG AGDRLVTLDA LGRWLEAA
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