Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_4105 |
Symbol | xseA |
ID | 4024627 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 4569989 |
End bp | 4571599 |
Gene Length | 1611 bp |
Protein Length | 536 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637964313 |
Product | exodeoxyribonuclease VII large subunit |
Protein accession | YP_571225 |
Protein GI | 91978566 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1570] Exonuclease VII, large subunit |
TIGRFAM ID | [TIGR00237] exodeoxyribonuclease VII, large subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCCGAC TGCTCGCCCC CGAAACCCTC GCCAATGTCG GCGAATTCAC CGTCTCCGAA CTGTCGCAGG CGCTGAAGCG GACGGTCGAG GACAGCTATG GCCATGTCCG GGTGCGCGGC GAAATCTCCG GGTTCCGCGG CGCGCATTCG TCCGGGCATT GCTATTTCGC GCTGAAGGAC GAGAGCGCCA AGATCGAGGC GGTGATCTGG AAGGGCGTGG CGGGGCGGAT GCGGTTCAAG CCGCAGGAAG GCCTCGAGGT CATCGCCACC GGCAAGCTCA CCACCTATCC GGGCTCGTCG AAATATCAGA TCGTGATCGA GGCGCTGGAG CCCGCCGGCG TCGGAGCGCT GATGGCGCTG ATGGAAGAGC GCAAGAAGAA GCTCGGCGCC GAGGGCCTGT TCGACGAAGC GCGCAAGCAG CTTTTGCCCT GGCTGCCGGA CGTGATCGGC GTGGTCACCT CGCCGACCGG CGCGGTGATC CGCGACATTC TCCACCGGCT GGAAGACCGC TTCCCGCGCC GGGTCCTGGT GTGGCCGGTG AAGGTCCAGG GCGAAGGCTC GGCCGAACAG GTCGCGGCCG CGATCCACGG CTTCAACGCG CTGCCCGAGG GCGGCCCGAT CCCTCGGCCC GATCTGTTGA TCGTCGCGCG CGGCGGCGGC TCGCTCGAGG ATCTGTGGTC GTTCAACGAG GAAATCGTGG TGCGCGCCGC GGCGGAAAGC ATGATCCCGC TGATCTCCGC GGTCGGTCAC GAGACCGACG TGACGCTGAT CGATTTCGCC GCCGACAAGC GCGCGCCGAC GCCGACCGCC GCCGCCGAAA TGGCGGTGCC GGTGCGTGCC GAACTGTTCG TCGAGGTGCA GAGCTTTTCG CGGCGGATGA TGCTGTGCTG GACGCGCGGT CAGGATTCCC GCCGCAACGA ACTCCGCGCC GCCGCCCGCG CTCTGCCGGC CGCAAGCGAA CTGCTCGCGA TCCCGCGGCA ACGGCTCGAC ACGGCGGCGG CGGGGCTGCC GCGGGCGCTG CGCGCCAATA CGCATGCGCA TCATCGCCGC TTCGCCAAGG CCGCGGCGGG CATCACCCTC AACGTTCTGC GGGCGCAGGT CAGCCACAGC GCGCAGCGGC TCGGCATCAC CGGCGAACGG CTGAAGCATG GCGCCCGCGC CACGCTGCGC CATCGCCGCG ACCGCTTCGA CGGTCTCGCG ATCCGGCTGC AGGCCTCGAA ACTCGCCAAT GAGCAGGCGC AGCGGATGCA GATCGCGCGC GAGCGCGAGC GGATGCAGCG GCTCGCCGAG CGCGCGCGGC GTGCGCTGAC GACGCTGCTC GATCGTCAGC AGGCGCGCCT GACGCAATCC GGCAAATTGC TGACCGCCCT GTCCTATCGC GGCGTGCTGG CGCGCGGCTT CGCACTGGTG CGCGACGCCG ACGGCCACGC CGTCCATGCC GCCGCAGCGG TGAGCGCCGG CGCGCAACTC AGCGTCGAAT TCGCCGACGG CCGCGTCAGC GTCACGGCGG ATGGCGGCCA TGCCGGCGAA CCAGCAAAGC CGACGACGCC AGCGTCCAAA CCAACGCAGA AGCGCACACC GAAGCCGGTC GATCAGGGGT CGCTGTTCTA G
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Protein sequence | MARLLAPETL ANVGEFTVSE LSQALKRTVE DSYGHVRVRG EISGFRGAHS SGHCYFALKD ESAKIEAVIW KGVAGRMRFK PQEGLEVIAT GKLTTYPGSS KYQIVIEALE PAGVGALMAL MEERKKKLGA EGLFDEARKQ LLPWLPDVIG VVTSPTGAVI RDILHRLEDR FPRRVLVWPV KVQGEGSAEQ VAAAIHGFNA LPEGGPIPRP DLLIVARGGG SLEDLWSFNE EIVVRAAAES MIPLISAVGH ETDVTLIDFA ADKRAPTPTA AAEMAVPVRA ELFVEVQSFS RRMMLCWTRG QDSRRNELRA AARALPAASE LLAIPRQRLD TAAAGLPRAL RANTHAHHRR FAKAAAGITL NVLRAQVSHS AQRLGITGER LKHGARATLR HRRDRFDGLA IRLQASKLAN EQAQRMQIAR ERERMQRLAE RARRALTTLL DRQQARLTQS GKLLTALSYR GVLARGFALV RDADGHAVHA AAAVSAGAQL SVEFADGRVS VTADGGHAGE PAKPTTPASK PTQKRTPKPV DQGSLF
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