| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3849 |
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| Symbol | |
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| ID | 4024365 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 4286381 |
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| End bp | 4288435 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637964053 |
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| Product | Outer membrane autotransporter barrel |
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| Protein accession | YP_570971 |
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| Protein GI | 91978312 |
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| COG category | [N] Cell motility |
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| COG ID | [COG5571] Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0448048 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCTGGA TTTCAAGCGG AGGCGCGGGG AATTGTGCGC CGAATTTGTT CACGCGCATT
TGGACTGTAT TGCTGACCAG CGCTTTGATG ACGGCGATTT CTGGCGCCAT GCCGGCTCCG
GCGCAGGCTC AGTTCGCCAG GCTGTTTGGC TTCGGTGACA GCTACGCCGA TACTGGCGCT
GCGCCCGGCG GCGCATATCG CCTGATCGGA ACCTATGGGA GCGGCACGGT CAGCATCCCG
TATTTTCCTT TTACGCTAAC TCCGAACGAC TTCTGGCCTT GTCCAAGTCC CACTTATACG
AGCTGCCGGT TTACCGGCAG CACCAATTTC GTCGACTCGC TGCAATCGAT CTACGGCCTT
TCGAGCCTGA CGAATTTTTC GATCGGCGGC GCCCGCACGA ATAACACCAA CACCATGCCG
TTCCTGTCCA GCAGCTACGG ACTGCCTTAT GAACTGCAAC AATTCGTTGC CAGCGGGATA
CGGTTTACTG ATCGTGATCT GATTGCGCTG TCGATCGGCG GCAACGACCT GTCCGGCATC
AATGTCGGCA ACGGTGACCT CGCCTCCCAG AACCAGATCA TCGTTGCGGG GGCGCTGCAG
TCGGCCTCGA ACGCCGTGGG CGGCGTACAG CAATTGGTGG CGGCAGGCGC GCGCAATATC
GCATGGCTCG GCACCGGGAG TTCAAAATGG TTCCCGGAGC GGACCCTGGG CTCACAGGGT
GCGACCCTCG GGCAATTCAA CTTCAGCGAC CCGCAGCGCG ATGCATGGGC TGACGCCTAC
TACCAGCAGA CCCAGCTGCT GCTGGCGCCG CTCGCGCAAG CGGGCGTGCG CATCTTCCTG
TTCAATTTCG GTATTCTGCA GCAGCGCATC CACGACAATC CTGGGATGTA TGGGTTTGCT
GGTGTCCCCG CGGGCTCTTT TGGGTGCGAA GCCGGGCCGG GGACCGGCTC GACGCCGGTG
ACGGTCGCGG TGAATGTCGC GGGCTGCTTC TATGAAAACT CGGTGCATCC GACCGGCGCC
GCGATGGCGC TGATCGCCAA CTACATGGCG AACCAGATCA ACGCGCCGAC CACGGTGGCG
CCGCAGGCGG GCATCTCGAC CGGCCTGCTC GGCGGCTTCT CGAATTCGGT GTTCGACCGC
CTCGAGGCCA GCCGCCGCTT CCAGCCTTAC GGCGTCAATG CCGCGATGGC CGCGATGCCG
AGTAAGGCCG TCGCGCTGGC GGACCCGGCG GATCGCTGGT CGGTGTTCGG GGCCGCGAGC
TACGCCGGCG GCAATCGCGA CCGGCAGTTC TATGCCGCCG GCTATGATTA CGGCGCAGCG
GGCGGCTATC TCGGGCTCGA ATACCAGTTC AATTCGAACT GGCGCGTCGG CGGGGTGTTC
GGCTATTCGC AGCCGGACGT CAAACTTGCG GTCCAGGATG CGCGTAACCG GATCGACGCG
TTCCAGTTCG CCGGCTACGG CTCCTACACC GATGCGCATT GGTTTGCCGA CGGCCTCGTC
GCCTATGGTC GTCAGGATTT CGCGTTGGAA CGCCGCGGCA TCATCGACGT CATCCGCGCC
AACACCAGCG CTGACGTCTT CACGGTCGCC GGCCGCGGCG GCTATCTGTT CGATGCCGGC
CGGCTCCGGG TCGGGCCGAT TGCAGGGCTG AACTACACCA ACGCAACGAT CCGGGCCTAT
ACCGAGACCG GCGACATCCT GCTCACCATG CTGGTGGACC GGCAGACCCT CAACACGCTC
ACCGGCGACG CCGGCGTTCA GATCCGTTAC CCGCTGCAGA TCGGCAACGG CGTCTACACG
CCGTTCGTCA ATCTCACCGC CGCGCACGAT TTCCTCGGCT CCAGCCACAC CGTCACGACC
ACGCTGGTGA CGGCGCCTCT GCTGCCGGTG CTGACACCGG TGTCCGCCGA TGGTGGCACC
TATGGCAGAG TTGCGGCCGG CGTGTCGGCG GTGGTGGCCG CCAATGTCAC GGCTACGCTG
ACGGGCACGA CCAGCTTCGC CCGGCAAGGC GGCAACGCCG GTGGAGTCAG CGGCGGCTTC
AAACTGGCTT TCTAG
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| Protein sequence | MAWISSGGAG NCAPNLFTRI WTVLLTSALM TAISGAMPAP AQAQFARLFG FGDSYADTGA
APGGAYRLIG TYGSGTVSIP YFPFTLTPND FWPCPSPTYT SCRFTGSTNF VDSLQSIYGL
SSLTNFSIGG ARTNNTNTMP FLSSSYGLPY ELQQFVASGI RFTDRDLIAL SIGGNDLSGI
NVGNGDLASQ NQIIVAGALQ SASNAVGGVQ QLVAAGARNI AWLGTGSSKW FPERTLGSQG
ATLGQFNFSD PQRDAWADAY YQQTQLLLAP LAQAGVRIFL FNFGILQQRI HDNPGMYGFA
GVPAGSFGCE AGPGTGSTPV TVAVNVAGCF YENSVHPTGA AMALIANYMA NQINAPTTVA
PQAGISTGLL GGFSNSVFDR LEASRRFQPY GVNAAMAAMP SKAVALADPA DRWSVFGAAS
YAGGNRDRQF YAAGYDYGAA GGYLGLEYQF NSNWRVGGVF GYSQPDVKLA VQDARNRIDA
FQFAGYGSYT DAHWFADGLV AYGRQDFALE RRGIIDVIRA NTSADVFTVA GRGGYLFDAG
RLRVGPIAGL NYTNATIRAY TETGDILLTM LVDRQTLNTL TGDAGVQIRY PLQIGNGVYT
PFVNLTAAHD FLGSSHTVTT TLVTAPLLPV LTPVSADGGT YGRVAAGVSA VVAANVTATL
TGTTSFARQG GNAGGVSGGF KLAF
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