Gene RPD_3808 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3808 
Symbol 
ID4024324 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4248464 
End bp4249990 
Gene Length1527 bp 
Protein Length508 aa 
Translation table11 
GC content64% 
IMG OID637964012 
ProductAMP-dependent synthetase and ligase 
Protein accessionYP_570930 
Protein GI91978271 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID[TIGR01923] O-succinylbenzoate-CoA ligase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.762435 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTTCG CTTATTTCGA CTGGATCAAC CATCACGCCG AAGTTCGTCC CGACCGGACC 
GCGCTGATCG ATCTGGCGAC GCAACGCCGG CTCACTTATC GCGCGCTCGA CGATCGGGTC
GATCGCCTCG CCTCACACTT GGCGACGCTC GGCGTCGGCC GTGGCGATCG CGTCGCGGTG
CTCGCCGCAA ACACCACCGA GACGCTGGAG GTGCAATTCG CCTGCTTTCG GCTCGGCGCA
ATCTTCGTGC CGCTGAACAT CCGGCTCACA GTGCACGAAC TGGCTTTCAT TCTCGGCGAC
GCCACGCCGC GGGTGCTCAC GCACGATCAG GATTCCGCCG TGATGGCGCA CGAACTTCAG
ACGAAGTGCA CCATCGCTCA TCTGCTCGCA TTTGGCGCGC CCTATGAAGC GGCGCTGGCG
AACTCGCCGC GTCTGGGCGC AGCGGAAGCG GTGACGCTCG ATGACGTCTC CACCATCATG
TACACGTCGG GCACCACCGG CAAACCGAAG GGAGCCATGA TCACCCACGG CATGACCTTC
ATCAACGCTG TCAATCTGGG CATCCCGGCG TTCGTTTCGC AGCGGACGGT GTTTCTCTGC
GTGCTGCCGC TGTTCCACAC CGGCGGACTG AACTGCTACA CTAATCCGGT GTTGCACGCT
GGCGGCACCG TGATCCTGAT GCGGGCGTTC GATCCCGGCG CGGCGCTGAA GATCATCGGC
GACCCAGCGA TCGGCCTGAC GCACTTTTTC GGTGTGCCGT CGATCTATCA GTTCATGTGC
CAGCACCCGG CCTTCGCCGA AACCGATCTG TCGCGGCTGC AGCTCGCAGG CGTCGGCGGC
GCATCGATGC CAGTGCCTCT TCTGCGAATC TGGCAGGATC GCGGCTGCGC CCTGGTGCAA
GGCTACGGCA TGACCGAGAC CAGCCCGGCT GTGTTGATGC TGGATTCAGA CGACGCCGCG
CGGAAAGCCG GATCGGCGGG CAAGCCGGTG TTGCACGCCG ATCTCAAGAT CGTCGGGGTC
GACGGCGAGC CGGTGAATCC CGGCGACATG GGCGAATTGT GGGTGAAGGG CCCGAACATC
ACGCCCGGCT ACTGGAATAG GCCCGACGCC AATCGCACCA GTTTCACCGA TGGCTGGCTG
CACACCGGCG ACGCCGCGCG AGTCGACGAC GAGGGCTTCT ACTACATCGT CGATCGCACC
AAGGACATGT ACATTTCCGG CGGCGAAAAC GTCTATCCGG CCGAGGTCGA GGACGTGCTG
TATCAATTGC CGGAGGTCGC CGAAGCCGCG GTGATCGGCG CGCCCGACCC GCAATGGGGC
GAGACCGGCG TCGCGATCAT CGCGATCAAG AATGGACACG ACCTCCCTGA GACCAAGCTG
CTGGCGCATT GCCGTGAACG ATTGGCGCGG TTCAAATGCC CGCAACGGGT GGTTTTCGTC
GAGGCGCTGC CGCGCAACGC CACCGGAAAG GTGCACAAAC CGACGCTGCG CGAGCGCTTC
CTCGCGCGCG AGACCGCCGA CGCCTGA
 
Protein sequence
MNFAYFDWIN HHAEVRPDRT ALIDLATQRR LTYRALDDRV DRLASHLATL GVGRGDRVAV 
LAANTTETLE VQFACFRLGA IFVPLNIRLT VHELAFILGD ATPRVLTHDQ DSAVMAHELQ
TKCTIAHLLA FGAPYEAALA NSPRLGAAEA VTLDDVSTIM YTSGTTGKPK GAMITHGMTF
INAVNLGIPA FVSQRTVFLC VLPLFHTGGL NCYTNPVLHA GGTVILMRAF DPGAALKIIG
DPAIGLTHFF GVPSIYQFMC QHPAFAETDL SRLQLAGVGG ASMPVPLLRI WQDRGCALVQ
GYGMTETSPA VLMLDSDDAA RKAGSAGKPV LHADLKIVGV DGEPVNPGDM GELWVKGPNI
TPGYWNRPDA NRTSFTDGWL HTGDAARVDD EGFYYIVDRT KDMYISGGEN VYPAEVEDVL
YQLPEVAEAA VIGAPDPQWG ETGVAIIAIK NGHDLPETKL LAHCRERLAR FKCPQRVVFV
EALPRNATGK VHKPTLRERF LARETADA