Gene RPD_3741 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3741 
Symbol 
ID4024257 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4179109 
End bp4180431 
Gene Length1323 bp 
Protein Length440 aa 
Translation table11 
GC content63% 
IMG OID637963945 
Producttranscriptional regulator PpsR 
Protein accessionYP_570863 
Protein GI91978204 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR02040] transcriptional regulator PpsR 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000829732 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGACGGTG TGATTCGGGA CGCGACCGTT TCGCCCGCGA TGTCGGGGGA AAGTGTCGAG 
GCCTGGCTCG GCCGCTCTTG GACCGAGATC GCCGGCGACA ATGGAGGCGA CAAGATCCGG
CGGATCGTTG AGGACGCCCG GACCAGCGGC ATTTCTGCCT TCCGTCAAAT CAACCAGCGG
TTCCCTTCAG GCGCTGAGAT CCCGATCGAA TTCACCACCA TGCTGCTGGG TGATCGCACC
GGCATGCTGG CGGTCGGCAA GAATTTGCAG GCGGTTGCCG AACTGCATTC GCGTTTGATC
GCGGCGCAGC AGACCATCGA GCGCGACTAT TGGCGGCTCC GCGAAATGGA GACGCGCTAC
CGTCTGGTGT TCGACGCGGC GACCGAGGCG GTGATGATCG TCGCGGCGAA CGATCTGCGT
ATCGTCGAAG CCAATCGTGC GGCAGTCCAG GCGCTGAGCG GGATTGATCG CGGCAACGAC
GATGTGACCG GCCGCGAGAT CCTGCGCGAG ATCGCACCGG TCGATCGGGA AGCCGTACGT
GAGATGCTTC TGCGCATCCG TGATCGCGGC AAGGCGCTCA GCATCCTGGT CCATGTCGGC
CGCGATGCGC GATCCTGGAT GCTGCGCGGG TCGCTGGTGT CCTCGGAGCA GGGACAGGTG
TTTCTGCTGC AATTCGCTCC TGTGGCGGGC GCCATGCCGC GCGGCGACGA CCGCGCGGAG
CCGACGGTCC TCAAGGCCCT GATCGACAGG GTGCCGGATG GCTTTGTCGC ACTCGACGCC
GGCGGCGTGA TCCGCCACGC CAACCAGGCA TTTCTCGATA TCGTGCAGAT CGGCTCGAAA
GGATCTGCGA TCGGCGAGTC GCTCGGTCGC TGGCTCAGTC AACCCGGCGC CGATCTGACG
GCTCTGCTAT CGCATCTGCA ACGCTACAAG ACGGTGCGGT TGTTCCAGAC CACCATCCGC
GGTGAACTCG GCAGCGAGAC CGACGTCGAG ATTTCGGCGG TCGACGGCGA CGACCAGAAC
TACGTCGGCG TGTTGATCCG CAACGTCTCG CGTCGTCTTG GCGCCGGCGA GACTGATGCG
CTTCGTGCCG CGCTGGGCCC GATCAGCAAG CAACTCGGTC GCTCATCGCT GCGCAAGCTG
GTGAAAAATA CCGTGAGTAT TGTCGAGCGA CACTACGTCA AGGAAGCACT CGAACTCACC
AACGGCAACC GCACAGCAAC CGCGGATTTG CTAGGGTTGA GCCGACAGAG TCTCTATGCC
AAGCTCGCGC GCTATGGGCT CGACGACAAG GGAGCCGCCT CCCAAGACGA TACTGAGGAC
TGA
 
Protein sequence
MDGVIRDATV SPAMSGESVE AWLGRSWTEI AGDNGGDKIR RIVEDARTSG ISAFRQINQR 
FPSGAEIPIE FTTMLLGDRT GMLAVGKNLQ AVAELHSRLI AAQQTIERDY WRLREMETRY
RLVFDAATEA VMIVAANDLR IVEANRAAVQ ALSGIDRGND DVTGREILRE IAPVDREAVR
EMLLRIRDRG KALSILVHVG RDARSWMLRG SLVSSEQGQV FLLQFAPVAG AMPRGDDRAE
PTVLKALIDR VPDGFVALDA GGVIRHANQA FLDIVQIGSK GSAIGESLGR WLSQPGADLT
ALLSHLQRYK TVRLFQTTIR GELGSETDVE ISAVDGDDQN YVGVLIRNVS RRLGAGETDA
LRAALGPISK QLGRSSLRKL VKNTVSIVER HYVKEALELT NGNRTATADL LGLSRQSLYA
KLARYGLDDK GAASQDDTED