| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3588 |
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| Symbol | |
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| ID | 4024102 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 4000578 |
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| End bp | 4001072 |
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| Gene Length | 495 bp |
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| Protein Length | 164 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637963792 |
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| Product | homoprotocatechuate degradation transcriptional regulator HpaR |
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| Protein accession | YP_570712 |
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| Protein GI | 91978053 |
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| COG category | [K] Transcription |
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| COG ID | [COG1846] Transcriptional regulators |
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| TIGRFAM ID | [TIGR02337] homoprotocatechuate degradation operon regulator, HpaR |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.561471 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.732711 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGGGATT TTTCACGTTC GCTGCCGATG CAGTTGCTGC GCAGCCGCGA GGCGGTGATG
CGCCAATTCC GGCCGCTGCT GCGCGCCCAC GGCCTCAGCG AACAGCAATG GCGGATATTG
CGTGCGCTGA CGGCGGTCGA CACCACCGAA GTCACCGAGC TGGCGCACAG CGCTTATTTG
CTGGGGCCGA GCCTGTCGCG GATTCTGCGC GACCTCGAGG CCCGCAAGCT GATCGCGCGG
AAACCATCGA AGGACGATCA GCGCCGCAGC ATGGTGTCGA TCACACGCAA GGGGCTGACC
CTGATCGCGG CGGTGGCGCC GTTTTCGGAG GCGATCTACG CCGAGATCGC GCGCCGTTAC
GGCGCTGCGA AACTCGCCGA ACTGCAGGAG ATGCTGCGCG TGCTGGAAGC CAGCCTGTCG
GCGCTGCCGG TGCGTCATGC CGTGGAAGCG GTAGACAGCC CGAAGGATTT TCGCTCAACT
CGCAAGACTA AATGA
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| Protein sequence | MRDFSRSLPM QLLRSREAVM RQFRPLLRAH GLSEQQWRIL RALTAVDTTE VTELAHSAYL
LGPSLSRILR DLEARKLIAR KPSKDDQRRS MVSITRKGLT LIAAVAPFSE AIYAEIARRY
GAAKLAELQE MLRVLEASLS ALPVRHAVEA VDSPKDFRST RKTK
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