| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3573 |
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| Symbol | |
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| ID | 4024087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3977754 |
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| End bp | 3979718 |
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| Gene Length | 1965 bp |
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| Protein Length | 654 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637963777 |
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| Product | squalene cyclase |
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| Protein accession | YP_570697 |
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| Protein GI | 91978038 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.191218 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTCCG GAACTTTCAA TCCGGGTGGA GAGCGCGGCA ACACGCTCGA CGCCTCGATC
GACGCGGCGC GCGCCGCGCT GCTGGGTTAT CGTCGTGACG ACGGCCATTG GGTGTTCGAA
CTCGAGGCCG ACTGCACCAT TCCGGCCGAG TACGTGCTGC TCCGGCACTA TCTTGGTGAA
CCGATCGACG CCGCGCTGGA AGCCAAGATC GCCGTTTATC TGCGCCGGAC CCAGGGCGCA
CATGGCGGCT GGCCGCTGGT GTATGACGGC GAATTCGACA TGAGCGCCAC CGTGAAGGGC
TATTTCGCGC TCAAGATGAT CGGCGACAGC ATCGACGCGC CGCATATGGC CAAGGCGCGC
GAGGCGATCC TGTCGCGCGG CGGCGCGGTC CACGCCAACG TGTTCACGCG ATTCCTGCTG
GCGATGTTCG GCATCCTGAC CTGGCGCGCC GTTCCGGTGC TGCCGGTCGA GATCATGCTG
CTGCCGATGT GGTCGCCGTT CCATCTCAAC AAGATCTCGT ATTGGGCGCG CACCACGATC
GTGCCGCTGA TGGTGCTGGC GGCGCTGAAG CCGCGCGCGG TCAACCGGCT CGGCGTCGGG
CTCGACGAGC TGTTCCTGCA GGACCCGAAA TCGATCGGGA TGCCCGCCAG GGCGCCGCAT
CAGAATCGCG GCCTGTTCGC GCTGTTCGGT GCGATCGACG CGGTGCTGCG GGTGATCGAA
CCACTGATCC CGAAGAAGCT GCGGAAACAC GCGATCGACC GCGCCGTCGC CTTCGTCGAG
GAGCGGCTGA ACGGCGAGGA CGGTCTCGGC GCGATCTATC CGCCGATGGC CAACACCGTG
ATGATGTACA AGGTGCTCGG CTATCCCGAG GACCATCCGC CGCGGGCGAT CACCCGGCGC
GGCATCGATC TGCTGCTGGT GATCGGTGAG GAGGAGGCCT ATTGCCAGCC CTGCGTCTCG
CCGATCTGGG ACACTTCGCT GACCTGCCAC GCGCTGATCG AGGCGGGCGG CGCCGAGGCC
GCGCAGCCGG TGCGCGAGGG CTTGGACTGG CTGCTGCCGA AGCAGGTGCT CGACCTCAAG
GGCGACTGGG CGGTGAAGGC CCCCAATGTC CGCCCCGGCG GCTGGGCGTT CCAGTACAAC
AACGCCCATT ATCCCGATCT CGACGACACC GCGGTGGTGG TGATGGCGCT CGACCGCGCC
CGCCGCGATC AGCCGAGCGC GGCCTACGAC AATGCCATCG CCCGCGGCCG CGAATGGATC
GAGGGGATGC AGAGCGACGA CGGCGGCTGG GCTGCCTTCG ATGTGAACAA CACCGAATAT
TATTTGAACA ACATCCCGTT CTCGGACCAC GGCGCGATGC TCGATCCGCC GACCGAGGAC
GTAACCGCGC GTTGCGTTTC GATGTTGGCG CAACTCGGCG AGACCGAGCA GACCAGCAAG
GCGGTGGCGC GGGGCGTTGC CTATCTGCGC AAGACCCAGC TTCCGGATGG CTCGTGGTAC
GGCCGATGGG GCATGAACTA CATCTATGGC ACCTGGGCGG TGCTGTGCGC GCTGAACGCC
GCCGGCGTCG ATCATCAGGA CCCGGCGATC CGCAAGGCGG TCGCCTGGCT GGCGTCGATT
CAGAACGCCG ATGGCGGCTG GGGCGAGGAC GGGGTCAGCT ACCGGTTGGA CTACCGGGGC
TACGAAACTG CGCCGTCCAC GGCGTCGCAA ACGGCATGGG CCTTGCTTTC AATCATGGCT
GCAGGGGAAG TCGATCATCC GGCGGTGGCG CGCGGGATTG AGTACCTAAA AGGCACACAG
ACCGAAAAAG GACTGTGGGA CGAGCAGCGC CACACCGCTA CAGGCTTTCC GCGCGTGTTT
TATCTGCGGT ATCATGGCTA CTCAAAGTTC TTTCCGCTCT GGGCGCTGGC GCGGTATCGA
AATTTGAGAG CCACGAACAG CAAGGTCGTA GGGGTCGGAA TGTGA
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| Protein sequence | MDSGTFNPGG ERGNTLDASI DAARAALLGY RRDDGHWVFE LEADCTIPAE YVLLRHYLGE
PIDAALEAKI AVYLRRTQGA HGGWPLVYDG EFDMSATVKG YFALKMIGDS IDAPHMAKAR
EAILSRGGAV HANVFTRFLL AMFGILTWRA VPVLPVEIML LPMWSPFHLN KISYWARTTI
VPLMVLAALK PRAVNRLGVG LDELFLQDPK SIGMPARAPH QNRGLFALFG AIDAVLRVIE
PLIPKKLRKH AIDRAVAFVE ERLNGEDGLG AIYPPMANTV MMYKVLGYPE DHPPRAITRR
GIDLLLVIGE EEAYCQPCVS PIWDTSLTCH ALIEAGGAEA AQPVREGLDW LLPKQVLDLK
GDWAVKAPNV RPGGWAFQYN NAHYPDLDDT AVVVMALDRA RRDQPSAAYD NAIARGREWI
EGMQSDDGGW AAFDVNNTEY YLNNIPFSDH GAMLDPPTED VTARCVSMLA QLGETEQTSK
AVARGVAYLR KTQLPDGSWY GRWGMNYIYG TWAVLCALNA AGVDHQDPAI RKAVAWLASI
QNADGGWGED GVSYRLDYRG YETAPSTASQ TAWALLSIMA AGEVDHPAVA RGIEYLKGTQ
TEKGLWDEQR HTATGFPRVF YLRYHGYSKF FPLWALARYR NLRATNSKVV GVGM
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