| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3564 |
|---|
| Symbol | |
|---|
| ID | 4024078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 3963828 |
|---|
| End bp | 3966002 |
|---|
| Gene Length | 2175 bp |
|---|
| Protein Length | 724 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637963768 |
|---|
| Product | carbohydrate-selective porin OprB |
|---|
| Protein accession | YP_570688 |
|---|
| Protein GI | 91978029 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3637] Opacity protein and related surface antigens |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCGCG GGTTCGCGCC GGCCTTTCCC TCGGCTTCGA ACCGGCCACG ATTTGTGGTT
TTGTCGCTAC GTTGTGGGGA AATCCTGCCC TCGCCGCTCG CTGCGGCCGC TAACGGTCCG
ACATTGTGTT ACGGGACCGC CAATTCGAGT GCTGGAGTGA TTGGTCGCGT GCGAAAGACA
GTCATCATTG GAATCCTGGC CGGCGTCGTG ACGACGCCGG CAGCGGGTGG CGGGATTGTC
GTGAAGGCGC CCGCCGCCGG CGGTCCGGCC GTGTTCGATT GGAACGGATT CTACATCGGC
GGCCATTTCA GCTACGTCGC CGGCCGTTCC GATTGGACGG CTCAGCCGGC CGGCGTCAGT
GGCACGATCG ACCTGTTCGA TGCGTTCGAT GCGTTCAAGG GCACCGGTAG CTACACGCTC
GGTCTGCAAG CCGGCTACAA TGTGCTGCTG CCGTCGCGCT GGCTGCTCGG CCTCGAAGCC
GATCTGACCT CACCGAACCG GATCGGAGGC AACGCCAGCA TCAGCCCGCC GACAGGCACG
ATCGGAGGAC ACGACCACCA GACCCAGCTG GCCGGAACGG TGCGCGGCCG GCTCGGCTAC
GCGCTGGACG GCTGGCTGCC CTACGCCACC GCCGGCTTCG CCTGGAGCTA TGACCGGCTG
CGATGGCCGT CCGAGGCGGC GGCGACCGAG GAAACCGCGC TGCTGTGGCG GCTCGGATGG
GCCGCCGGAG CGGGCGTGGA GCTGCCGTTG TCGCCGGCCT GGACGGCGCG CGTGGAATAT
CTTGCGACCG GCTTTGGACG CGACACCGCC CGCTTCCCGA TCGCCGGTCA TCAAATCGAA
TCCGACGCGC TGATCCACGC CGTCCGGCTC GGCCTGAACT ATCGGCTGGG CGAGGACCTC
GCCAAGTCCG ACGTGTTCAC CAAGGGCATC GACGCGCTGG AGCTCGACCG CTTCGCCGTC
CACGGCCAGG CCACGCTGAC CTGGCAATAT GCGCCGCCGT TCCGTTCGCC CTATCGCGGG
CAGAACAGCC TCTTGCCGAA CCAGGCGCGG GAAACCTTCG ACATGACGTT CTATGTCGGC
ACGAAATTGT GGGACGGCGC GGAATTCTGG GTCAATCCGG AGATCGACCA GGGCTTCGGA
CTGAGCGGCA CCTTCGGCGT GGCGGCGTTT CCGAGCGCAG AATCCTACAA GGTCGGCTCC
GACTATCCCT ATGCGCGGCT GCCACGCTAC TTCGTCCGCC AGACCCTCGA CCTCGGCGGC
GCGACCGAGA CGATCCAGGG CGGCCCCAAC CAGTTTGCCG GCAAACAGTC CTCCGAGCGG
ATGGTGATCA CCGCCGGCAA GTTTTCGGTC GGCGACATTT TCGACGTCAA CCGCTACGCC
CACGATCCCC GCGTCGACTT CCTCAATTGG GGCCTGGCCG ACGCCACCAC CTTCGACTAT
GCCGCCGACG CTTGGGCCTT CACGTATGGC ACCGCGGTCG AGTGGTACAC CGGTCCATGG
ACGGTGCGCG GCGGCGTGTT CGATCTGCCG GTGACGCCGA ACAACACCGA CCTCGATCCG
AGCTTCGGCC AGTTCCAGAT GGTCGGCGAG CTCGAACACC GGCACCAGTT CTGGGGTCTT
TCCGGCAAGC TGCTCGTCAC CGGCTTTCTC AACCGTGCCC GGCTCGGTCG GTTTGACGAG
GCGGTGCGGC GGGGGCAGGC GACCGGGACG ACGCCCGAGA TCGCCGACGT GCGGCGCTAC
ACCAGCAAGA CCGGCGTGTC GGCCAGCCTG GAGCAGCAAC TCACGCCCGA CATCGGGCTG
TTCGCCCGCG CCGGCCTCAG CAGCCCGAAC CTCGAAACCA ACGCCTTCAC CGATTCCGAC
CGGGCGCTGT CCGCCGGCCT GTCGGTGTCC GGGCGGATGT GGGGACGTGC GGACGACACC
CTCGGGCTCG GCGGCTTGAT CAACCACATC TCGGCGGCGC GGATCGCCTA TCTCGACGCC
GGCGGCCTGA CCGCGATCAT CGGTGACGGC CGACTGCCCA ATTCCGGCAA TGAGCGGGTG
ATCGAGGCCT ATTACAGCCT TCCGGTGCTG TCCTGGCGGC TCACCGCGGA CTATCAATTC
ATCGCCAACC CGGCGTTCAA CCGCGACCGC GGTCCGGTTC ACGCCATCGC CACCCGGCTG
CGAACGCAGT TTTGA
|
|---|
| Protein sequence | MLRGFAPAFP SASNRPRFVV LSLRCGEILP SPLAAAANGP TLCYGTANSS AGVIGRVRKT
VIIGILAGVV TTPAAGGGIV VKAPAAGGPA VFDWNGFYIG GHFSYVAGRS DWTAQPAGVS
GTIDLFDAFD AFKGTGSYTL GLQAGYNVLL PSRWLLGLEA DLTSPNRIGG NASISPPTGT
IGGHDHQTQL AGTVRGRLGY ALDGWLPYAT AGFAWSYDRL RWPSEAAATE ETALLWRLGW
AAGAGVELPL SPAWTARVEY LATGFGRDTA RFPIAGHQIE SDALIHAVRL GLNYRLGEDL
AKSDVFTKGI DALELDRFAV HGQATLTWQY APPFRSPYRG QNSLLPNQAR ETFDMTFYVG
TKLWDGAEFW VNPEIDQGFG LSGTFGVAAF PSAESYKVGS DYPYARLPRY FVRQTLDLGG
ATETIQGGPN QFAGKQSSER MVITAGKFSV GDIFDVNRYA HDPRVDFLNW GLADATTFDY
AADAWAFTYG TAVEWYTGPW TVRGGVFDLP VTPNNTDLDP SFGQFQMVGE LEHRHQFWGL
SGKLLVTGFL NRARLGRFDE AVRRGQATGT TPEIADVRRY TSKTGVSASL EQQLTPDIGL
FARAGLSSPN LETNAFTDSD RALSAGLSVS GRMWGRADDT LGLGGLINHI SAARIAYLDA
GGLTAIIGDG RLPNSGNERV IEAYYSLPVL SWRLTADYQF IANPAFNRDR GPVHAIATRL
RTQF
|
|---|
| |