Gene RPD_3563 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3563 
Symbol 
ID4024077 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3963140 
End bp3963640 
Gene Length501 bp 
Protein Length166 aa 
Translation table11 
GC content62% 
IMG OID637963767 
Producthypothetical protein 
Protein accessionYP_570687 
Protein GI91978028 
COG category[S] Function unknown 
COG ID[COG3685] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.892765 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGCCG CCAAGGAAAA GCACCTCAAT GACCTGTTCC TCGACACCCT CAAGGACATC 
TATTTCGCCG AAAAGCAGAT TGTGAAAGCG CTACCGAAAA TGGCGAAGGC TGCCAATTCC
GACCAGCTCC GCGCGGCGTT CGAGAAACAT CTCGACGAGA CCGAAGGCCA GATCGAACGG
CTGGAGCAGA TCTTCGAGCT GCTCGACAAG CCGGCGCGCG GCAAGACCTG CGACGCCATT
CTCGGCATCA TCGACGAGGG CAAGGAGATC ATGGACGAGT ACAAGGGCTC GGCGGCGCTC
GATGCCGGTC TGCTGGCCGC GGCGCAGGCG GTCGAGCACT ACGAGATCTC GCGCTACGGC
ACGCTGAAGC AGTGGGCGAC CCAGCTCGGC ATGAAGGACG CCGCCAAGCT GATCGACCAG
ACCCTGCAGC AGGAAAAGAC CACGGACCAG ACTCTATCCA AACTCGCCGA GAGCGCGGTC
AACCTCGCCG CCGCAGCCTG A
 
Protein sequence
MAAAKEKHLN DLFLDTLKDI YFAEKQIVKA LPKMAKAANS DQLRAAFEKH LDETEGQIER 
LEQIFELLDK PARGKTCDAI LGIIDEGKEI MDEYKGSAAL DAGLLAAAQA VEHYEISRYG
TLKQWATQLG MKDAAKLIDQ TLQQEKTTDQ TLSKLAESAV NLAAAA