| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3554 |
|---|
| Symbol | |
|---|
| ID | 4024068 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 3952896 |
|---|
| End bp | 3953774 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637963758 |
|---|
| Product | IclR family transcriptional regulator |
|---|
| Protein accession | YP_570678 |
|---|
| Protein GI | 91978019 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1414] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.537366 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTC CGACCAAAAA GACAGCGACC GATCGCAGTT TCGTCGTCGC TCTGTCGCGC
GGCCTCGAAG TGCTGCGCGC GTTCGGCCCG AACGACGGGT TGCTCGGCAA TCAGGAAATC
GCGGCCCGGA CCAAGCTGCC GAAGCCGACT ATCTCGCGGC TGACCTACAC CTTGACCAAG
CTCGGCTACC TCACCCAGGT GCCACGATTC GAGAAGTATC AGCTCGCGCC GGCGGCGATG
TCGCTCGGCT ATGCGGCGCT CGCCAATCTC GGCGTCCGTC ACTTGTCACA GCCGTTCCGC
GACGAATTGA TGCAGCAGAC CGGCGGCGCG GTCGCGGTCG GCGCGCGTGA CCGGACCAGC
ATGATCTATG TCGGACAGGC GCGTTCCAGC CTCACCGTCG GCGTGCAGCT CGACGTCGGC
TCGCGAATCC CAATTGCAAC AACCGCGATG GGCCGTGCTT ACTTGTGTGC GCTGCACGGC
GAGGAACGCA CGTCTTTGCT GCGCGAACTT CGAGAGTACT ATGGCAGCCG CTGGCCGCGC
ATCAAGGATG GAATAGAACG CTCGGAGGAG ATGGTTGCGA AATACGGCTT CGCGATTTCC
GTCGGCGAAT GGCAGGACGA TGTACACGCC GCGGCCGTCG CATTGACGCT GAACGACGGT
ACCGGACCCT ACGCGTTCAA CTGCGGCGCG CCGGCTTTCC GTTTCACGGA AGATCGACTG
ATCAACGACA TTGGACCTCG TCTCGTGGCG ATGGTAAGGA AAATCGAAGC GGTGCTCGGC
GGGACAGCGG CGCCGCAAAC AAGAAGAACC GAAAAATCCG ACAACAAGAA ACCAAAAACA
GGAGGGAGAG TTGCCCGTGT CATCGAGGGG ATCAAGTAG
|
|---|
| Protein sequence | MKRPTKKTAT DRSFVVALSR GLEVLRAFGP NDGLLGNQEI AARTKLPKPT ISRLTYTLTK
LGYLTQVPRF EKYQLAPAAM SLGYAALANL GVRHLSQPFR DELMQQTGGA VAVGARDRTS
MIYVGQARSS LTVGVQLDVG SRIPIATTAM GRAYLCALHG EERTSLLREL REYYGSRWPR
IKDGIERSEE MVAKYGFAIS VGEWQDDVHA AAVALTLNDG TGPYAFNCGA PAFRFTEDRL
INDIGPRLVA MVRKIEAVLG GTAAPQTRRT EKSDNKKPKT GGRVARVIEG IK
|
|---|
| |