| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3452 |
|---|
| Symbol | |
|---|
| ID | 4023966 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3833015 |
|---|
| End bp | 3834664 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637963656 |
|---|
| Product | putative ABC transporter ATP-binding protein |
|---|
| Protein accession | YP_570576 |
|---|
| Protein GI | 91977917 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.747993 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGCC AGTTCGTCTA TTTCATGCAG GGCCTGACCA AGGCCTATCC GACCCGCAAG
GTGCTGGATA ACGTCCATCT GTCGTTCTAC CCCGACGCCA AGATCGGCGT GCTCGGCGTC
AACGGCGCCG GCAAGTCGAC GCTGCTCAAG ATCATGGCCG GGATCGACAA GGAATACACC
GGCGAGGCCT GGGTCGCCGA AGGCGCCCGC GTCGGCTATC TCGAACAGGA ACCGCAGCTC
GATGCCGCGC TGAACGTGCG CGAGAACGTC ATGCTCGGCG TTGCCAAGCA GAAGGCGATC
CTCGATCGCT ACAACGAGCT GGCGATGAAC TATTCCGAGG AAACCGCCGA CGAGATGACC
GCGCTCCAGG ACCAGATCGA GTCCGCGGGG CTGTGGGATC TCGACAGCAA GGTCGACCAG
GCGATGGACG CGCTGCGCTG CCCGCCCGAT GACGCAGACG TCACCAAGCT GTCCGGCGGC
GAGCGCCGTC GCGTCGCGCT GTGCAAGCTG CTGCTCGACC AGCCCGAACT GTTGCTGCTC
GACGAACCGA CCAACCATCT CGACGCCGAG TCGGTGTCTT GGCTCGAAAA TCATCTGCGC
AACTATCCGG GCGCGATCCT GATCGTCACC CACGATCGTT ACTTCCTCGA CAACGTCACC
TCCTGGATTC TCGAGCTCGA CCGCGGCAAG GGAATTCCCT ACGAGGGCAA CTACTCGTCC
TGGCTGGTGC AGAAGCAGAA GCGGCTGCTG CAGGAGGGGC GCGAGGATGC GGCCCACCAG
AAGACGCTCG AGCGTGAGCA GGAGTGGATC GCGTCGTCGC CGAAGGCACG CCAGGCCAAG
TCCAAGGCGC GCTACCAGCG CTACGATGAA CTGCTTGCCA AGGCCAGCGA GAAGCAGACC
CAGGCCGCGC AGATCATCAT TCCGGTGGCC GAGCGTCTCG GTAACAATGT GGTCGAATTT
GATCACCTGA CCAAGGGCTT CGGCGACAAG CTGCTGATCG ACGACCTGAC CTTCAAGCTG
CCGCCCGGCG GCATCGTCGG CGTGATCGGC CCGAACGGCG CCGGCAAGAC CACGCTGTTC
CGGATGATCA CCGGGCAGGA AAAGCCCGAC CAAGGTACCA TCACGGTCGG CGAGACCGTG
CATCTTGGCT ATGTCGATCA GTCGCGCGAC AGCCTCGACG CCAAGAAGAC CGTTTGGGAA
GAGATTTCCG GCGGCAATGA GCAGATCCTG CTCGGCAAGA AGGAAGTTAA TTCGCGCGGC
TATTGCTCGT CCTTCAACTT CAAGGGCGGT GACCAGCAGA AGAAGGTTGG TTCGCTGTCA
GGCGGCGAGC GTAACCGCGT CCACCTCGCC AAGATGCTGA AGTCCGGCTC CAACGTGCTG
CTGCTCGACG AACCGACCAA CGACCTCGAC GTCGATACGC TGCGGGCGCT GGAAGAGGCG
CTCGAGGATT TCGCCGGCTG CGCCGTGATC ATCAGCCATG ACCGCTGGTT CCTCGACCGT
ATCGCCACGC ATATCCTCGC CTTCGAGGAC GACAGCCACG TCGAATGGTT CGAAGGCAAC
TTCCAGGACT ACGAGAAGGA CAAGATGCGC CGGCTCGGTC AGGACTCGGT GATCCCGCAC
CGGGCGAAGT ATAAGAAGCT GACGCGGTGA
|
|---|
| Protein sequence | MARQFVYFMQ GLTKAYPTRK VLDNVHLSFY PDAKIGVLGV NGAGKSTLLK IMAGIDKEYT
GEAWVAEGAR VGYLEQEPQL DAALNVRENV MLGVAKQKAI LDRYNELAMN YSEETADEMT
ALQDQIESAG LWDLDSKVDQ AMDALRCPPD DADVTKLSGG ERRRVALCKL LLDQPELLLL
DEPTNHLDAE SVSWLENHLR NYPGAILIVT HDRYFLDNVT SWILELDRGK GIPYEGNYSS
WLVQKQKRLL QEGREDAAHQ KTLEREQEWI ASSPKARQAK SKARYQRYDE LLAKASEKQT
QAAQIIIPVA ERLGNNVVEF DHLTKGFGDK LLIDDLTFKL PPGGIVGVIG PNGAGKTTLF
RMITGQEKPD QGTITVGETV HLGYVDQSRD SLDAKKTVWE EISGGNEQIL LGKKEVNSRG
YCSSFNFKGG DQQKKVGSLS GGERNRVHLA KMLKSGSNVL LLDEPTNDLD VDTLRALEEA
LEDFAGCAVI ISHDRWFLDR IATHILAFED DSHVEWFEGN FQDYEKDKMR RLGQDSVIPH
RAKYKKLTR
|
|---|
| |