Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3411 |
Symbol | |
ID | 4023924 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 3794069 |
End bp | 3797461 |
Gene Length | 3393 bp |
Protein Length | 1130 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637963616 |
Product | Outer membrane autotransporter barrel |
Protein accession | YP_570536 |
Protein GI | 91977877 |
COG category | [S] Function unknown |
COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain [TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACGTGC CGACGGTGAT GAGTGGCGGG ATTGCGAAGG GCAGGGTGCG GATCGCGTCC GTCGCCGCGG CACGGATCAA GCACTTGCTG CTGTCGACCG CGCTGGCCGG CATCGTGGTC TATCCGCAGG CGTTGCTGGC GCAATCCTGG AATGGCGCCG TCGACGCCGA CTTTTCCAAC GGCGCCAACT GGAGCACCGG CGTCGCACCG ACCTCAACCG ACGTCTCGAC GATCGCATCC ACGCCGACCA CCCCGGTGGT GGCCGCGACC ACGGCGAATT CCGGGCAGAT CACGATGTCC GGTGCCACTC TCGGCATCAA TGCCGGCGCG ACACTGGTCC TCAACACCCT GACCCTCACG GGCGCGTCCA GCGTGACCGG GGCGGGCGCC ATCGCGACAA ATCTGTTGCA TCTGGACTCC GGCTCGGTCG GCACCGATGT GACGCTGGCG ACGCTGGCGA CCATGGGCGG CGGCACCTTC GGCGGCGCCA TCAGCGGCGC CGGCCAGCTG CTGGTCTCCA GCGGCTTCAA CTTCCTGACC GGCGCCAACA CCTATAGCGG CGGCACCGAC ATCAATACCA ACGCGTTCCT GACGGTCGGC GACAGCGCCA CCAGCGGCTC GATCACCGGC GACGTGCTGA ACAATGGCAA CCTCACCTTC ACCCGCTCCG ATACGACGAG CTATGGCGGC GTGATTTCCG GCATCGGCGT GGTCAACAAG AACGGCGCCG GCACGCTGAT GCTGTCCGGC GCCAACACCT ACAGCGGCGC AACGCGGATC CTGAACGGCA CGCTGCAGAC CTCCGCCAAC AACGTCCTCA GCAGCGCTTC GGCGCTGACG ATTTCCGCCG GGGCCACGCT CGAGCTCGGC AACACGCAAC AGACTGTGGC GTCGCTGGCC GGCGCCGGCA CGATCAATGT CGGTGCGTCG AGCAATGGCT TTACATTCGG AGCCGACAAC TCATCAACCA GCTTCTCCGG GACCGTCACA GGCGGTTTCA TGCGGTTTTA CAAGGAAGGC ACCGGCACCT TCAGCTTCAG CGGCACCGGC CCGACCAGTG GCGCTATGCA AGTCGATGGA GGCACGCTGG CTTTGGCCGG CGCGGCCGAC TTCAGCGGTG CAAGCGTCAA CTTGCAGGCC AATACGACGC TGGACATTTC CGGGGCCAAC GCCGGCATCT CGATCAAGGG CTTGCAAGGG GGGCTGAGCA GCACGGCGGT CCATCTCGGC AGCCGAACAT TGACGGTCCA GCGCACCGAC TTTGCCTTCG GAAACAACTT CAGCGGCGTC ATCGACGGCA GCGGCGGCCT GACCGTCGGG CAAAATTCGA CTTTGAACTT GTTCGGCGTC AACACCTATA CCGGCCCGAC CACGCTCAGC TCGGCGTCGG CGACCCTCGA CCTCAGACAT GTCAGCGCCA TCGCCGCCTC CAGCGAGGTC GATCTCGCGG CCAGCGGCGC CACGCTGGGG ATCTCCAATG CGGGCGGAGA CGCCACCATC CAATCGCTGC GCGGCGTCGC CGGCAGCATC CTCACATTGC GCAACAACAA TCTGGTGATC ACCAACGCGG CGTCGGATTT CGCCGGCATC ATCAAGCCGG TCTTCGGCGC GCCGACCGGC GGTGTCATCC TCAATGGCGG CCACCAGACG CTGTCGGGCA TCAACACCTA TCTGGGCGCC ACCACGGTCA ATGCCGGCAC GCTCTCGGTC AACGGCTCGA TCGCAACCTC GGCGCTGACC ACCGTCAATG CCGGCGGCAC GCTCGGCGGC GCCGGCACGG TCGGCAACAC CACGATCAAC GGCGGCGCGC TGGCGCCGGG CAATTCGATT GGCACGCTGA ACGTGAATGG CAATCTGTCG TTCACCGCGG CATCGAGCTA CATGGTCGAA TTCTCGCCGA CCACCGCCGA CCGCACCAAC GTCACCGGCA CCGCGACGCT CGGCGGCGCG ACGGTGAACG CGATCTTCGC CAGCGGCAGC TATGTGGAGC GGCAGTACAC CATCCTCAAC GCCACCGGCG GCATCGTCGG CACGTTCGGC CCGGTTGTGA ATTCCAACCT GCCGTCGGGC TTCAAGTCGA GCCTCGGTTA TGACGCCAAC AACGCCTATC TCAAACTGGC GCTCGATTTT ACGCCGACAC CGACGCCCAC ACCGACGCCG ACACCAACAC CAGCGCCCGA ACCGTCGCCA TTGCCGATCA ACAGCGGCCT CAACGGCAAC CAGACCCAGG TCGCCAACGC GCTGAGTAAC TACTTCGCGC GCGCCGGCAG CATCCCGATC GTGTTCGGCG CGCTGACGCC GGCGGGACTG AGCCTCGCGG CGGGCGAGAC CCCGACCGGC GCTCAACAGA CGACGTTCGA TGCGATGAAC ATGTTCATGG GCGTGCTGAC CGATCCGTTC GCCAATGGCC GTGGCCTGCC GAACGCTGCG TCCGGCGCGT CGTCATTCGC CGACGGCAAT GCCAGCCTCG GCAATCGCAA CGGCGCAGCC CGCGACGCCC ATGCGATGAT CACCAAGGCG GTCGTAAAGC CGCCGGTCGA GGCGCGCTGG AACGTCTGGG CCGCTGGCTT CGGCGGCGCG CAGACTACCG ACGGCAACGC GACGCTCGGC AGCACCACCG CGACCAGCCG GCTCTACGGG ATCGCAGCCG GCGCCGACTA CTGGCTGTCG CCGCAGACCG TCGCCGGCTT CGCAATGGCG GGCGGCGCCA CCAGTTTCGG CCTCGCTAAC GGACTGGGGT CCGGCCGGTC CGATCTGATC CAGGCTGGCG GCTTCGTGCG CCACAGCGTC GGCGCCGCCT ATCTCACCGC CGCCGCGGCC TATGGCTGGC AGGACATCAC CACCGAACGA AGCGTCGCGG TCGGCGGGAT CAATCAGCTC CAAGGCCGCT TCAACGCCCA TGCATTCTCC GGTCGGCTCG AAGCCGGCCA TCGCACTGTC GCGTCGGCGT TCGGCGGCAT CGGTCTCACG CCCTATGCAG CCACGCAGGT CACGGCTTTC GAGCTGCCGG CCTATGCCGA GCAAATGCTG AGTGGCGCGA ATGCCTTCGC GCTGAGCTAC GCGTCGAAGA CCGTCACCGC GACTCGCAGC GAGTTCGGCC TGCGCAGCGA CAAGTCCTAC GCCCTCAGCA ATGCCCTGCT GACGCTGCGC GGCCGCGCCG CCTGGGCGCA CGACTTCAAC GTCGACCGTT CGATCGCAGC GACCTTCCAG GCGCTGCCGG GCGCAAGCTT CGTGGTCGAC GGCGCCCGGC CGGCGCGCGA CGCGGCGCTG ACCACGGTGT CAGCGGAGAT CGCGTGGCTG AACGGGCTCT CGCTCGCGGC CGCCTTCGAG GGCGAATTTT CAGACGTCAC CCGCAGCTAT GCCGGCAAGG GGACGCTGCG CTACATTTGG TGA
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Protein sequence | MDVPTVMSGG IAKGRVRIAS VAAARIKHLL LSTALAGIVV YPQALLAQSW NGAVDADFSN GANWSTGVAP TSTDVSTIAS TPTTPVVAAT TANSGQITMS GATLGINAGA TLVLNTLTLT GASSVTGAGA IATNLLHLDS GSVGTDVTLA TLATMGGGTF GGAISGAGQL LVSSGFNFLT GANTYSGGTD INTNAFLTVG DSATSGSITG DVLNNGNLTF TRSDTTSYGG VISGIGVVNK NGAGTLMLSG ANTYSGATRI LNGTLQTSAN NVLSSASALT ISAGATLELG NTQQTVASLA GAGTINVGAS SNGFTFGADN SSTSFSGTVT GGFMRFYKEG TGTFSFSGTG PTSGAMQVDG GTLALAGAAD FSGASVNLQA NTTLDISGAN AGISIKGLQG GLSSTAVHLG SRTLTVQRTD FAFGNNFSGV IDGSGGLTVG QNSTLNLFGV NTYTGPTTLS SASATLDLRH VSAIAASSEV DLAASGATLG ISNAGGDATI QSLRGVAGSI LTLRNNNLVI TNAASDFAGI IKPVFGAPTG GVILNGGHQT LSGINTYLGA TTVNAGTLSV NGSIATSALT TVNAGGTLGG AGTVGNTTIN GGALAPGNSI GTLNVNGNLS FTAASSYMVE FSPTTADRTN VTGTATLGGA TVNAIFASGS YVERQYTILN ATGGIVGTFG PVVNSNLPSG FKSSLGYDAN NAYLKLALDF TPTPTPTPTP TPTPAPEPSP LPINSGLNGN QTQVANALSN YFARAGSIPI VFGALTPAGL SLAAGETPTG AQQTTFDAMN MFMGVLTDPF ANGRGLPNAA SGASSFADGN ASLGNRNGAA RDAHAMITKA VVKPPVEARW NVWAAGFGGA QTTDGNATLG STTATSRLYG IAAGADYWLS PQTVAGFAMA GGATSFGLAN GLGSGRSDLI QAGGFVRHSV GAAYLTAAAA YGWQDITTER SVAVGGINQL QGRFNAHAFS GRLEAGHRTV ASAFGGIGLT PYAATQVTAF ELPAYAEQML SGANAFALSY ASKTVTATRS EFGLRSDKSY ALSNALLTLR GRAAWAHDFN VDRSIAATFQ ALPGASFVVD GARPARDAAL TTVSAEIAWL NGLSLAAAFE GEFSDVTRSY AGKGTLRYIW
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