| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3398 |
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| Symbol | |
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| ID | 4023910 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3776281 |
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| End bp | 3777720 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637963603 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase |
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| Protein accession | YP_570523 |
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| Protein GI | 91977864 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.146335 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.470298 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAAC CACCGCTGTG GACTTCGGAT GCGATGGCGG AGGCGATGCG CGCCGCCGCG
AGCGGCTCGC TGCCGCGCGA CGTGTTCGGC ATTTCGATCG ACAGCCGCAC GCTGGCGCCG
GGCGATGCGT ATTTCGCGAT CAAGGGTGAC GTCCATGATG GTCACGATTT CGTCGCCGCC
GCGCTGAATG CCGGCGCGGC GCTGGCGGTG GTGGAAAGGG CGCAGCGCGC CAAGTTCGCC
GCCGACGCGC CGCTGCTGGT GGTCGACGAC GTACTCGACG GATTGCGCGA GCTCGGCCGC
GCGGCGCGGG CGCGGCTCGA CGCCAAGATC ATCGCGGTGA CCGGCTCGGT CGGCAAGACC
TCGACCAAGG AAGCGCTGCG CGGCGTGCTC GGGGCGCAAG GCGAGACCCA CGCTTCGGTG
GCGTCGTTCA ACAATCACTG GGGCGTGCCG CTGTCGTTGG CGCGCTGTCC GGCGGACGTG
CGCTACGCGG TGTTCGAAAT CGGCATGAAC CACGCGGGTG AAATCGAACC GCTGGTGAAG
ATGGTGCGAC CACATCTGGT GATCATCACC ACGGTGGAGC CGGTGCACCT CGAGTTCTTC
TCCGGCATCG AAGCGATCGC CGACGCCAAG GCGGAAATCT TCGCTGGGCT GGTGCCCGGC
GGCACGGCGG TTCTCAATCG CGACAATGCG ATGTTCAAGC GGCTCACCGA CAGCGCCCGC
AAGGCCGGCG TCGGTCGCGT CGTATCGTTC GGTGCCGATG TCGAGGCCGA TGCGCGGCTG
CTCGACGTCG CGTTGCACGC CGATTGCTCC GCGGTGCATG CGACGATTTT CGGCCGCGAC
GTCACTTACA AGCTCGGGAT TCCCGGGCGG CATATCGCGA TGAATTCTCT GGCCGTATTG
GCCGCGGCGG AAACTGTCGG CGCTGATCTC GCGCTGGCGG CGCTGGCGCT GTCGCACGTC
CAGCCCGCCG CCGGCCGTGG CGTCCGCCGC GCGCTCGAAT TCGGGCAAAG CGAGGCCACG
CTGATCGACG AGAGCTATAA TGCCAATCCG GCGTCGATGG TGGCGGCGCT GGGCGTGCTC
GGCCAGGTCC CGGTCGGTCC GCAGGGTCGG CGGATCGTTG TGCTCGGCGA CATGCTGGAA
CTCGGCCCGG CCGGGCCGGA GTTGCATCGC GACCTCGCCG AGTCGGTGCG GAATAACGCA
ATCGATCTGG TGTTCTGCTG CGGTCCGCTG ATGCGCAATT TGTGGGACGC CCTTTCCTCA
GGGAAGCGAG GGGGCTATGC AGAGACCGCG GCCGCGCTCG AATCTCAGGT GGTTGCGGCG
ATCCGTGCCG GCGACGTGCT GATGATCAAA GGCTCGCTCG GCTCGCGCAT GAAAACGATT
GTCACCGCGC TCGAGAAGCG CTTTCCCGGC AAGACCGCGC GCGATGACGC TGCGGTGTAA
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| Protein sequence | MSKPPLWTSD AMAEAMRAAA SGSLPRDVFG ISIDSRTLAP GDAYFAIKGD VHDGHDFVAA
ALNAGAALAV VERAQRAKFA ADAPLLVVDD VLDGLRELGR AARARLDAKI IAVTGSVGKT
STKEALRGVL GAQGETHASV ASFNNHWGVP LSLARCPADV RYAVFEIGMN HAGEIEPLVK
MVRPHLVIIT TVEPVHLEFF SGIEAIADAK AEIFAGLVPG GTAVLNRDNA MFKRLTDSAR
KAGVGRVVSF GADVEADARL LDVALHADCS AVHATIFGRD VTYKLGIPGR HIAMNSLAVL
AAAETVGADL ALAALALSHV QPAAGRGVRR ALEFGQSEAT LIDESYNANP ASMVAALGVL
GQVPVGPQGR RIVVLGDMLE LGPAGPELHR DLAESVRNNA IDLVFCCGPL MRNLWDALSS
GKRGGYAETA AALESQVVAA IRAGDVLMIK GSLGSRMKTI VTALEKRFPG KTARDDAAV
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