Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3341 |
Symbol | |
ID | 4023852 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 3703762 |
End bp | 3706974 |
Gene Length | 3213 bp |
Protein Length | 1070 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637963546 |
Product | heavy metal efflux pump CzcA |
Protein accession | YP_570466 |
Protein GI | 91977807 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3696] Putative silver efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.197745 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCAACG CCATTCTGGA GTTCTCCATT CGCCAGCGCT GGTTGGTGAT GATCGGCGTG CTGGCCGTCG CCGCGTTCGG CGCCTGGAAT TTCACCCGGC TGCCGATCGA CGCGGTGCCC GACATCACCA ACGTGCAGGT GCAGGTCAAC GTCGAAGCCC CGGGGTATTC GCCGCTCGAG GTGGAGCAAC GCATCACCTT TCCGGTCGAG ACCGGCATGG GCGGGATTCC AAACCTGCAA TATACGCGCT CGCTGTCGCG CTACGGCCTC AGCCAGGTCA CGATCGTCTT CAACGAAGGG ACGAGCATCT TTTTCGCCCG CCAGCAGGTC AGCGAGCGGC TCCAGCAGGT CAAGGATCAG CTTCCGAGCG GCATCGAAAT GGCGATGGGT CCGATCTCCA CGGGCCTCGG CGAGATCTAC ACGTTCGCGC TCGACGCCAG GCCGGGCGCC AAGAATGCCG ACGGTTCGCC GGTCACGCCG ATCGATCTGC GTACCGTGCA GGACTGGATC ATCAAGCCCC AGCTCAGGAC GGTGCCGGGC GTCGTCGAGG TCAACACCAT CGGCGGCTAT GAGAAGCAGT TCCACGTGCT GCCCGACCCC AGCAAGCTGA TGGCGTTCCG TCTCGGCTTT CGCGACGTGA TGACGGCGCT GGCGGCGAAC AATGCGAATG TGGGCGCGGG CTACATCGAG AGGAACGGCG AACAATATCT CGTTCGCACG CCGGGCCAGG TGACGAATAT CGACGATATC CGCGGCGTGG TGGTCGGAAC GCGTGGCGGC GTGCCGGTTC GTATCAGCGA CGTGGCGGAG GTGCAGATCG GGACGGATCT GCGAACGGGC GCTGCTACGC TCGACGGCAG GGAGACGGTG CTCGGCACCG CAATGCTTCT GATCGGGGAG AACAGCCGAA CGGTCTCGCA GCGGGTGTCG GCGAAGCTGG ACGACATCGC CAGATCGCTT CCGGAAGGCA TATTCGCGCG CGTGCTCTAC GACCGCACGG TGCTGGTCGA CGCGACCATC GCCACCGTCG AGAAGAACCT CGTCGAAGGC GCGCTGCTCG TCATCGTGAT CCTGTTTCTG ATCCTGGGCA ATTTCAAAGC CGCCATCGCG ACCGCGCTGG TAATCCCGCT GTCGATGCTG ATCACCATCA CCGGCATGGT CGAGAGCAAG GTCAGCGCCA ATCTCATGAG CCTCGGCGCC ATCGATTTCG GCATCATCAT CGACGGCGCG GTGATCATCG TCGAGAACTG CCTGCGCCTT CTGGCGGTGG AGCAGCACAG ACGAGGCCGG CTGCTCACGC GTGACGAGCG GTTCGCCACC ATTCTCGCGG GCTCCCGGGA GGTCATCAAG CCGAGCTTGC TGGGCACGCT GATCATCGCG GTGGTGTACC TGCCGGTGCT GACCCTCACC GGCGTCGAGG GCAAGATGTT CACCCCGATG GCGTTGACGG TGCTGATGGC GCTCGCCGGC GCGTCGATCC TGTCGATGAC CTTCGTACCC GCAGCGGTCG CGCTGCTGGT AACCGGAAAG GTCACCGAAA AGGAGAACTT CTTCATGCGC GGCGCGCGGC GGATCTATCT GCCGCTGCTC GGCCTTGCCA TCCGTCACCG CGGCATCGTG GCGACGCTCG CCGTCGTGCT GCTTCTGGTC AGCGGATATG CCGCCTCCAG AATGGGCGGT GAGTTCATTC CGAGCCTCGA CGAAGGCGAC ATCGCGATGC ACGCGATGCG GATTCCGGGA ACCAGCCTGA CGCAGGGCAT CGACATGCAG TTGAAGCTGG AGAAGGCGCT TCTGCAATTG CCGGAGGTGA AGGAGGTGTT CTCCAAGCTC GGTACGTCCG AAGTGGCCAC CGATCCGATG CCGCCGAACG TCGCCGATAC GATCATCATG CTGAAGCCGC GCGCGGAATG GCCCGATCCG AAGCGGAGCA AGGCGGATCT CGTGGCGGCG GTCGAGAAAC AGGCCGAGAC GCTGCCGGGC AACGTCTATG AGCTGACCCA GCCGATTCAG ATGCGGTTCA ACGAACTGAT CTCGGGCGTC CGCAGCGACG TCGGCGTCAA GATCTTCGGC GACGATTTGG ATACGCTGCT CGAGGTCGCG GGGCGGGTTC AGACGGTGTT GCAGGCCGTG CCCGGCGCCG CCGACGTGAA GACCGAGCAG ACCGCGGGCC TGCCGGTGCT CACTGTGAAG CTCGACCGAC CGGCGCTGTC GCGATTGGGA TTGAGCGTGA CGGACGTTCA AGGTCTCGTG GAGACGGCGG TCGGCGGCAA AAGCGCCGGT CTCGTCTTCG AAGGCGACCG CCGCTTCGAC TTGGTCGTTC GATTGCCCGA GCGGCTGCGG TCCGACGTCG AGGCGATCCG CAATCTTCCG ATCCCGCTGC CGGCCGTGGC GGAAACGCCG ACGACTGCGA CCAAGGCGTC CTGGACAAAC TCGCCGTTGT CGCAGATGCG CTACACGCCG TTGTCGGCGG TGGCGCAGAT CGAGGTCGCG CCCGGGCCGA ACCAGATCAG CCGCGAGAAC GGCAAGCGCC GCATCGTGGT GACGGCGAAT GTCCGCGGGC GCGATCTCGG GTCATTCGTA TCCGACGCTC AGGCGCAGAT CGCGACGAAG GTCAAGATTC CCGCGGGATA CTGGATCGGG TGGGGCGGCC AGTTCGAGCA ACTCGTCTCG GCCACGAAAC GTCTGACCAT CGTCGTTCCG GTCGCGCTGC TGCTGATCTT CCTGCTGCTG TTCGTCAGTC TCGGCTCAGC GGCGGACGCG TTGCTGGTGT TCAGCGGCGT ACCGCTGGCG CTGACGGGCG GCGTTGCGGC TTTGCTACTC CGCGACATTC CGCTCTCGAT CAGCGCAGGC ATCGGCTTCA TCGCGCTGTC AGGCGTCGCG GTGCTGAACG GCCTGGTGAT CGTCTCATTC ATCGAGAAGC TCCGCGCAGA CGGCAAGACC ATCATCGAAG CCGTCAAGGA AGGGGCTCTG ACCCGTCTGC GGCCGGTTCT GATGACAGCG ATGGTCGCAT CGCTCGGCTT CGTGCCGATG GCGATCGCCA CCGGCGCCGG CGCCGAGGTT CAGCGACCGC TGGCGACCGT CGTCATCGGA GGGATCATCT CGTCGACGAT CCTCACTCTG CTCGTTCTTC CGGCGCTCTA CGTCCTGTTT CGCCGGGAAT CCTCGCCTGC CGCAGTGGAG GCGACGCCCA ACCAGACCCA AGGAGACCAT TGA
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Protein sequence | MINAILEFSI RQRWLVMIGV LAVAAFGAWN FTRLPIDAVP DITNVQVQVN VEAPGYSPLE VEQRITFPVE TGMGGIPNLQ YTRSLSRYGL SQVTIVFNEG TSIFFARQQV SERLQQVKDQ LPSGIEMAMG PISTGLGEIY TFALDARPGA KNADGSPVTP IDLRTVQDWI IKPQLRTVPG VVEVNTIGGY EKQFHVLPDP SKLMAFRLGF RDVMTALAAN NANVGAGYIE RNGEQYLVRT PGQVTNIDDI RGVVVGTRGG VPVRISDVAE VQIGTDLRTG AATLDGRETV LGTAMLLIGE NSRTVSQRVS AKLDDIARSL PEGIFARVLY DRTVLVDATI ATVEKNLVEG ALLVIVILFL ILGNFKAAIA TALVIPLSML ITITGMVESK VSANLMSLGA IDFGIIIDGA VIIVENCLRL LAVEQHRRGR LLTRDERFAT ILAGSREVIK PSLLGTLIIA VVYLPVLTLT GVEGKMFTPM ALTVLMALAG ASILSMTFVP AAVALLVTGK VTEKENFFMR GARRIYLPLL GLAIRHRGIV ATLAVVLLLV SGYAASRMGG EFIPSLDEGD IAMHAMRIPG TSLTQGIDMQ LKLEKALLQL PEVKEVFSKL GTSEVATDPM PPNVADTIIM LKPRAEWPDP KRSKADLVAA VEKQAETLPG NVYELTQPIQ MRFNELISGV RSDVGVKIFG DDLDTLLEVA GRVQTVLQAV PGAADVKTEQ TAGLPVLTVK LDRPALSRLG LSVTDVQGLV ETAVGGKSAG LVFEGDRRFD LVVRLPERLR SDVEAIRNLP IPLPAVAETP TTATKASWTN SPLSQMRYTP LSAVAQIEVA PGPNQISREN GKRRIVVTAN VRGRDLGSFV SDAQAQIATK VKIPAGYWIG WGGQFEQLVS ATKRLTIVVP VALLLIFLLL FVSLGSAADA LLVFSGVPLA LTGGVAALLL RDIPLSISAG IGFIALSGVA VLNGLVIVSF IEKLRADGKT IIEAVKEGAL TRLRPVLMTA MVASLGFVPM AIATGAGAEV QRPLATVVIG GIISSTILTL LVLPALYVLF RRESSPAAVE ATPNQTQGDH
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