| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3330 |
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| Symbol | |
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| ID | 4023840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 3689464 |
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| End bp | 3692592 |
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| Gene Length | 3129 bp |
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| Protein Length | 1042 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637963534 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_570455 |
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| Protein GI | 91977796 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.66718 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACTCGTT TCTTCATCGA CCGCCCGATC TTCGCGTGGG CCATTTCGCT CTTCATCATG
CTGGCCGGCG GCATCTCATT GGTGTCCCTC CCCATATCGC AATATCCAGA CGTCGCCCCC
GTGACGGTCT CGATCACGGC GAACTATCCC GGCGCGACAC CTGAGCGGCT CTACGACGGC
GTCACACGCA TCATCGAGGA GGAGCTCAAT GGCATCCCGG GGATGATGTA TTTCGAGTCG
ACCAACGACG CCGGCGGCGC GGCCCAGATC ACCGTGTCGT TCGGCCCCGG CTATGATCCG
TCAAAAGCAA CGATCGCGGT TCAGAATCGA ATCAAGCGTA TCGAAGCGCG CCTTCCACGC
GCCGTTGTGC AGCAGGGCGT GCTTGTCGAG GAGGCGAGCA CTGCGTTTCT GATGTTCGTC
ACACTCAGCG CGACCGGCGC CGGCACAACC GAGATCGAAC TCGGCGACAT CGCCGCCCGC
CGCGTCACCG GAGAGCTGCG GCGCGTCCCC GGCGTCGGCC GCGCGACGCT CTATTCGAGC
GAGAAAGCGA TGCGCATCTG GATTGATCCC GACAAGCTCA TCGGCCTCAA TCTGACCGCG
GGCGACGTGA CCTCGGCGGT TGAAGGCCAG AACGCTCAGA TTGCGTCCGG CATGATCGGG
GCACAGCCTG CCAAAAAAGG GCAGCGCATT GCAGCGAACG TCCTGGTCAA GGGCCAACTC
ACTACGGTGA AGGAGTTCGA AGAAATCGTC CTGCGCGCCA ACCCGGACGG ATCTATCGTT
CGTCTTCGCG ACGTCGCCGA GGTCGAATTG GGAGGGCAGA GTTACCTGCA GCAGACCCGT
CAGGATGGTA AACCCTCCGC CGGCATCGGC ATCCAGCTTG CACCGGGCGC CAACGCTCTC
GCGACCGCGA CCGGCGTCCG CGCCAAAATC GCAGAGCTTC AAAAAACCCT GACCAACGTC
AAGCTGCAGG TGCCCTACGA CACCACTCCG TTCGTCCAGG TCTCGATCAA GCAGGTGTTG
ATGACCTTGC TCGAGGCGAT GGTTCTGGTC TTCGCGGTGA TGTTCCTGTT TCTCCAGAAC
ATCCGGTACA CGATCATTCC CACCATCGTC GTTCCGATCG CGTTGCTCGG CACCTGCGCG
GTGATGTTGA TGCTCGGATT CTCCATCAAT GTTCTGACGA TGTTCGGAAT GGTCCTGGCG
ATCGGCATCC TCGTCGACGA CGCCATCGTC GTCGTCGAGA ACGTCGAACG CATCATGAAG
GATGAAGGTC TTCCCCCCAG GGAGGCGACA TTCAAAGCCA TGAGCCAGAT CTCCGGAGCA
GTCGTCGGCA TCACCGTTGT TCTGATTTCC GTTTTCGTGC CGCTCGCCTT CTTCCCAGGC
TCGGTCGGCG TGATCTACCG ACAATTCTCG GTAGCGATGG CGACCTCGAT CGCTTTCTCG
GCGTTTCTCG CTCTGTCGCT GACGCCTGCG CTTTGCGCGA CGCTGCTGAA GCCGGTCGAC
AAGGCGCATG GCCACAGCCA GCGCGGATTC TTCGGGTTGT TCAACAGATT CTTCGATGCG
ACCAGCCGGC GTTACGTCGG AGGAGTCAGC AGCGTCGTGA GGCGGCCGGT TCGTTCGCTC
CTCGTCTACA GCGTTCTCAT CGCAGCGATG GTTTTTGGCT TCAACCGTCT GCCATCCGGA
TTCCTGCCGG GAGAAGACCA AGGCTACCTG ATCGTCGATG TTCAAACACC GCCGGAATCT
TCGACGGAAC GAACTCTCGA TATCATCAAG CAGATCGAGG CTCATTTTTC GTCCGAGCGC
GCCGTAGACA GCTACACGAC CGTCGGAGGG TACGGCTTTT CCGGCCAAGG ACAGAACACG
GCAATTGCCT TCATCAACTT GAAGGATTGG TCGGAGCGCG GGGCAAATGA CAGCGCGCAG
TCGATCGGCG ATCGCGCGAA TGCGTTTCTG AGCACACTCC CCGACGCTAT CGCAATTTCG
CTCGCGCCGC CGCCGATCGA GTCGCTCGGC AATTCGGCCG GCTTCACCTT CCGTCTCCAG
GACAAGGAGC AAAAGGGGTA TGCCGCTCTC GCTGCGGCAC GAGATCAGCT GCTGAATGCG
GCGACACAGA GCCCGGTCCT GCAAGGCGTC TATGTCGAGG GTTTGCCGAC CGCGCCCCAG
ATCGAGATGC TGATCGACCG CGAGAAGGCC AATGCACTCG GCGTCACCTT CGCAGCGATC
AACCAGGCGC TATCGACCAG CTTGGGATCG ACCTACGTCA ACGATTTCCC GAACAACGCA
CGCATGCAGC GCGTGATCGT GCAAGCCGAT GCAAATCGGC GGATGACGGC CGAGGACATT
TTGCAACTGT CGGTGAGGAA CAGCAAGAAT CAGATGGTTC CGCTGCAATC GGTGGCACAG
GTGAAATGGT CGATGGGACC GTCACAAGTC GTCGGCTTCA ACGGGTTTCC AAGTATCAAA
TTCAGCGGCA GCGCGGCGCC AGGATACGCG AGCGGCGACG CGATGGCCGA GATGGAGCGC
CTTGCCGCGG AGCTTCCGAG CGGCTTCGAC TACGCATGGT CGGGCCAATC ATTGCAGGAA
AAGCTGTCGG GCAGCCAAGC CATCTACCTG CTCGTGCTAT CGCTGCTGTG CGTCTTCCTG
TGCCTGGCGG CGCTTTACGA AAGCTGGTCG ATTCCGTTCG CCGTGCTGCT CGTGGTGCCG
ACCGGCGTGA TCGGATCGGT GTTCGCGATG CTGCTGCGCG ATATGCCGAA TGACATCTAC
TTCAAGGTCG GCCTGATTAC CGTGATCGGG CTGTCGGCGA AGAACGCGAT CCTGATTATT
GAGATCGCAA AGGACCTCGT CGCCCAGGGC GTAGCCTTCG GCGAGGCGGC GATCGAAGCC
TGCCGACGTC GCTTCCGTCC CATCTTGATG ACATCGCTCG CATTCATTCT GGGTGTTTTG
CCGCTCGCGA TTGCAACGGG CGCAGGCTCC AATAGTCAGC GCGCCATCGG CACCGGCGTT
TTCGGCGGCA TGTTGACGGC GACGGCGCTC GCGATCTTCT TCACCCCTGT CTTGTACGTC
CTGATCACCA GCACATTCGG GAAGCGCAAA GGCAAAAGCA GTGGTGGTGA GACGCCAGTT
CCTGAGTAA
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| Protein sequence | MTRFFIDRPI FAWAISLFIM LAGGISLVSL PISQYPDVAP VTVSITANYP GATPERLYDG
VTRIIEEELN GIPGMMYFES TNDAGGAAQI TVSFGPGYDP SKATIAVQNR IKRIEARLPR
AVVQQGVLVE EASTAFLMFV TLSATGAGTT EIELGDIAAR RVTGELRRVP GVGRATLYSS
EKAMRIWIDP DKLIGLNLTA GDVTSAVEGQ NAQIASGMIG AQPAKKGQRI AANVLVKGQL
TTVKEFEEIV LRANPDGSIV RLRDVAEVEL GGQSYLQQTR QDGKPSAGIG IQLAPGANAL
ATATGVRAKI AELQKTLTNV KLQVPYDTTP FVQVSIKQVL MTLLEAMVLV FAVMFLFLQN
IRYTIIPTIV VPIALLGTCA VMLMLGFSIN VLTMFGMVLA IGILVDDAIV VVENVERIMK
DEGLPPREAT FKAMSQISGA VVGITVVLIS VFVPLAFFPG SVGVIYRQFS VAMATSIAFS
AFLALSLTPA LCATLLKPVD KAHGHSQRGF FGLFNRFFDA TSRRYVGGVS SVVRRPVRSL
LVYSVLIAAM VFGFNRLPSG FLPGEDQGYL IVDVQTPPES STERTLDIIK QIEAHFSSER
AVDSYTTVGG YGFSGQGQNT AIAFINLKDW SERGANDSAQ SIGDRANAFL STLPDAIAIS
LAPPPIESLG NSAGFTFRLQ DKEQKGYAAL AAARDQLLNA ATQSPVLQGV YVEGLPTAPQ
IEMLIDREKA NALGVTFAAI NQALSTSLGS TYVNDFPNNA RMQRVIVQAD ANRRMTAEDI
LQLSVRNSKN QMVPLQSVAQ VKWSMGPSQV VGFNGFPSIK FSGSAAPGYA SGDAMAEMER
LAAELPSGFD YAWSGQSLQE KLSGSQAIYL LVLSLLCVFL CLAALYESWS IPFAVLLVVP
TGVIGSVFAM LLRDMPNDIY FKVGLITVIG LSAKNAILII EIAKDLVAQG VAFGEAAIEA
CRRRFRPILM TSLAFILGVL PLAIATGAGS NSQRAIGTGV FGGMLTATAL AIFFTPVLYV
LITSTFGKRK GKSSGGETPV PE
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