Gene RPD_3279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3279 
Symbol 
ID4023788 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand+ 
Start bp3634077 
End bp3634700 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content62% 
IMG OID637963482 
Producttransglutaminase-like cysteine peptidase, BTLCP 
Protein accessionYP_570404 
Protein GI91977745 
COG category[S] Function unknown 
COG ID[COG3672] Predicted periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.824885 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones6 
Fosmid unclonability p-value0.012285 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTGTTA GCAGGGGATT TCGGACGGGA CTGATCATCG CAGCGGCGAT CGTCACGATG 
ACGGCGGCAG CACAAGCGGG AGAGAAAGTT CGCTACGCCA GCATCGGCGA TACGACGCGT 
GCGCCGATCG GATGGATCGA ATTCTGCGCC GAGAATCCCG GCGAATGCCG CGGCGGCCGA 
AACCAGGCGC GCGACATCGT GCTGACGCCG ATCGCTTGGC GCGATCTACT GAAGGTCAAT 
CGCTGGGTCA ACGACAACGT CAAGCCGCTG ACCGACATGG ACCACTGGGG CGTGATCGAG 
AAATGGTCGA TGCCGACCGA CGGCTCCGGC GACTGCGAGG ACTACGTGCT GCTCAAGCGC 
AAGATGCTGA TCGACGCCGG ATGGCCGCGC GAAGCTCTGC TGATCACCGT GGTCCGCGAC 
AAGAAGAACG AAGGTCACGC GGTGCTGACG GTGAAGACCG ACAAGGGCGA GTTCGTTCTC 
GACAATCAGA ACGAGGATGT CGTCGCCTGG ACCGAGACCG GCTACCGCTT CGTCAAGCGT 
CAGTCGCAAA CCGAAGCGAA TGAATGGGTT GCTCTCGGCG ATTCCCGCCC GGCCGTCGCT 
ACCGCCAGCG CGCAACAGCG CTGA
 
Protein sequence
MLVSRGFRTG LIIAAAIVTM TAAAQAGEKV RYASIGDTTR APIGWIEFCA ENPGECRGGR 
NQARDIVLTP IAWRDLLKVN RWVNDNVKPL TDMDHWGVIE KWSMPTDGSG DCEDYVLLKR 
KMLIDAGWPR EALLITVVRD KKNEGHAVLT VKTDKGEFVL DNQNEDVVAW TETGYRFVKR 
QSQTEANEWV ALGDSRPAVA TASAQQR