Gene RPD_3273 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3273 
Symbol 
ID4023782 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3628301 
End bp3628861 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content69% 
IMG OID637963476 
Producthypothetical protein 
Protein accessionYP_570398 
Protein GI91977739 
COG category[S] Function unknown 
COG ID[COG5388] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00114404 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAGCATC CGTCGAGTCG CGCATTCTTT GCCTATTGGG ACCGACAGCG CGGCGCCGCG 
CTGACGCCCC AACGCAGCGA GATCGAGCCC GGCGCAGTCC GCGAGCTGCT CGGCGACATC
TTCGTGCTGT CATGCGATTC CAGCGCCGGC TATCCGTTCC GCGTCGCCGG AACACGGCTG
TGCGCCCTGC TCGGTCGCGA TCTCAAGGGT GAAAGTCTGA CCGGCCTGTT CGCCGCCGAC
AGCCGACAGG AGTGCGAGGA CATTCTCGGC GTCGTCGCCG AGGAAGCGCT GCCGCTGGTC
GCGGGAGCCA CCACCGCGTC CGGCGACGGC TCGATCGCTC ATTTGGAGCT GTTGCTGCTG
CCGTTTGCGG CGCGCGCCCA TACGCCGCTG AGCATGACCG GCCTGCTGGC CCCGCTCGGC
GCGAGGATCG CAGGCGAGTT CGGCGAATTG CGGCTGACGG CGTGGCGCAC GCTCGGCCGC
CCGTCCCGCC GCCTGCGGCC GCGGGTGTTG CGCAAATGGG AAGTCGCGCG CGGGCTGATG
GTCTACGAAG GACTGCGCTG A
 
Protein sequence
MKHPSSRAFF AYWDRQRGAA LTPQRSEIEP GAVRELLGDI FVLSCDSSAG YPFRVAGTRL 
CALLGRDLKG ESLTGLFAAD SRQECEDILG VVAEEALPLV AGATTASGDG SIAHLELLLL
PFAARAHTPL SMTGLLAPLG ARIAGEFGEL RLTAWRTLGR PSRRLRPRVL RKWEVARGLM
VYEGLR