| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3195 |
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| Symbol | rpoB |
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| ID | 4023700 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3543944 |
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| End bp | 3548068 |
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| Gene Length | 4125 bp |
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| Protein Length | 1374 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637963396 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_570322 |
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| Protein GI | 91977663 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCAGC AGACGTTCAC CGGTCGCAAA CGCGTTCGCA AGTTCTTTGG TCACATCCGG
GAAGTCGCCG AGATGCCGAA CCTCATCGAG GTTCAGAAGG CGTCTTACGA CCAGTTCCTG
ATGGTCGCCG AACCTCCCGG AGGTCGGGAT GACGAGGGCT TGCAAGCGGT CTTCCGGTCG
GTGTTTCCGA TCTCGGACTT CTCCAACGCC TCGATGCTGG AATTCGTTCG CTACGAATTC
GAGCCGCCGA AATACGACGT CGACGAGTGC CGCCAGCGCG GCATGACCTA TGCTGCGCCG
CTGAAGGTGA CGCTGCGCCT CATCGTGTTC GATATCGACG AGGAAACCGG CGCCCGTTCG
GTCAAGGACA TCAAGGAGCA GGACGTCTAC ATGGGCGATA TTCCGCTCAT GACGATGAAC
GGCACCTTCG TGGTCAATGG CACCGAGCGC GTCATCGTCT CGCAGATGCA CCGTTCGCCG
GGCGTGTTCT TCGATCACGA CAAGGGCAAG ACCCATTCGT CGGGCAAGCT GCTGTTCGCC
GCCCGCGTCA TCCCCTATCG CGGCTCCTGG CTCGACATCG AGTTCGACGC CAAGGACATC
GTGTTCGCGC GTATCGACCG TCGCCGCAAG ATTCCGGTGA CGTCGCTGAT GTTCGCGCTC
GGGCTCGACG GCGAAGAGAT CCTGTCGACC TTCTACAAGA AGATTCTCTA CAAGCGGATC
AAGGAAGGCT GGCGCGTGCC GTTCGACGCC AACCGCTTCC GTGGCTACTC GACCGTCAAC
GACCTGATCG ACGCCGACAC CGGCAAGGTC GTGCTCGAGG CCGGCAAGAA GCTGACCGTG
CGCGCGGCGC GCCAGTTGCA GGAAAAGGGC CTCAAGGCGC TGCGGCTGTC CGACGAGGAA
CTGGTCGGCA ACTATCTCGC CGAAGATCTG GTCAACCCGA AGACCGGCGA GATCTATGCG
GAAGCCGGTG AGGAAATCAC CGAGAAGTCG CTGAAGGCGC TGAACGAAGA AGGCTACAAG
GAGCTGCCGC TCCTCGACAT CGATCACGTC AATATCGGTC CCTACATCCG CAACACGCTC
TCGGCCGACA AGAACATGAC GCGCGAAGAC GCGCTGTTCG ACATCTACCG GGTGATGCGC
CCGGGTGAGC CGCCGACGCT CGACTCCGCG CAGAACATGT TCCAGTCGCT GTTCTTCGAT
AGCGAGCGCT ACGACCTGTC CGCGGTCGGC CGCGTCAAGA TGAACATGCG CCTCGACCTC
GATGCGCCCG ATACCCATCG CACCCTGCGC AAGGAAGACA TCCTCGCCGT GATCAAGACC
CTGGTCGGCC TGCGGGACGG CAAGGGCGAG ATCGACGACA TCGACCATCT CGGCAACCGC
CGGGTGCGCT CGGTCGGCGA GCTGATGGAG AACCAGTACC GCATCGGCCT GCTCCGCATG
GAGCGCGCGA TCAAGGAGCG GATGTCGTCG GTCGATATCG ACACGGTGAT GCCGCAGGAC
CTGATCAACG CCAAGCCGGC GGCCGCCGCG GTGCGCGAGT TCTTCGGCTC GTCGCAGCTG
TCGCAGTTCA TGGACCAGAC CAACCCGCTG TCGGAGATCA CCCACAAGCG CCGTCTTTCG
GCGCTTGGCC CGGGCGGTCT GACCCGCGAG CGCGCGGGCT TCGAAGTCCG CGACGTGCAT
CCGACCCACT ATGGTCGTAT CTGCCCGATC GAGACGCCGG AAGGCCCGAA CATCGGTCTG
ATCAATTCGC TGGCGACCTT CGCCCGCGTC AACAAATACG GCTTCGTCGA GACTCCCTAT
CGCAAGGTCA AGGAAGGCCG CGTCACCGAC GAGGTGGTCT ACCTCTCGGC GATGGAAGAG
GGCCGCTACG CGGTGGCCCA GGCCAACATC TCGCTCGACG CCAAGGGCCG CTTCACCGAC
GACCTGATCG TCTGCCGCGC CGGCGGCACG CGTGACGTCG TGCTGATCCC GGCCGACCAG
GTCGACTACA TGGACGTGTC GCCGAAGCAG CTCGTTTCGG TCGCCGCGGC GCTGATCCCG
TTCCTCGAGA ACGACGACGC CAACCGCGCG CTGATGGGCT CGAACATGCA GCGCCAGGCG
GTGCCGCTGG TTCGCGCCGA GGCGCCGTTC GTCGGCACCG GCATGGAAGG CGTGGTCGCG
CGTGACTCGG GCGCGGCGAT CGCCGCGCGC CGCACCGGCG TGATCGACCA GATCGACGCC
ACGCGTATCG TCATCCGCGC CACCGAAGAC CTCGATCCGA CCAAGTCGGG CGTCGATATC
TACCGGCTGA TGAAGTACCA GCGCTCCAAC CAGTCGACCT GCATCAACCA GCGCCCGCTG
GTGAAGGTGG GCGACAGCGT CGCCAAGGGC GACATCATCG CGGACGGTCC GTCGACCGAC
CTCGGCGAAC TCGCGCTCGG CCGCAACGTG CTGGTCGCGT TCATGCCGTG GAACGGCTAC
AACTTCGAAG ACTCGATCCT GCTCTCCGAG CGGATCGTGA AGGAAGACGT CTTCACCTCG
ATCCACATCG AGGAATTCGA AGTGATGGCC CGCGACACCA AGCTGGGCCC TGAGGAAATC
ACCCGCGACA TTCCGAACGT CTCGGAAGAA GCGCTGAAGA ACCTCGACGA AGCCGGCATC
GTCTATATCG GCGCCGAAGT CCGCGCCGGC GACATCCTGG TCGGCAAGAT CACGCCGAAG
GGCGAAAGCC CGATGACGCC GGAAGAAAAG CTTCTGCGCG CCATCTTCGG CGAAAAGGCC
TCGGACGTTC GCGACACCTC GCTGCGGGTG CCGCCCGGCG TGCAGGGCAC CATCGTCGAA
GTCCGCGTCT TCAACCGCCA CGGCGTCGAC AAGGACGAGC GTGCGCTGGC GATCGAGCGG
GAAGAGATCG AACGCCTCGC CAAGGACCGC GACGACGAAC AGGCGATTCT CGACCGTAAC
GTCTACGGCC GTCTTGCCGA CCTGCTCGAC AACCGTCAGG GCGTCTCCGG CCCGAAGGGC
TTCAAGAAGG ACACCAAGAT CACCCGCGCG GTGCTCGAGG AATATCCGAA GTCGCAGTGG
TGGCTGTTCG CCGCGCCGAA CGACAAGCTG ATGGCCGAGA TCGAGGCTAT GCGGAAGCAG
TACGACGAGT CGAAGAAGGG CCTTGAACAG CGCTTCCTCG ACAAGGTCGA GAAGCTGCAG
CGCGGCGACG AGCTGCCGCC CGGCGTGATG AAGATGGTCA AGGTCTTCGT CGCGGTGAAG
CGCAAGATCC AGCCGGGCGA CAAGATGGCC GGCCGCCACG GCAACAAGGG CGTGGTGTCG
AAGATCGTGC CGATCGAGGA CATGCCGTTC CTCGAAGACG GCACCCATGC CGACATCGTG
CTGAACCCGC TCGGCGTGCC GAGCCGCATG AACGTCGGTC AGATCCTCGA GACCCATCTC
GGCTGGGCCT GCGCCGGCAT GGGCAAGAAG ATCGGCCAGA CCATCGACGC CTATTATCAG
AGGCAGGATC TCAAGCCGCT GCGCGAGACC CTGAAGAAGA TCTACGGCGA CGACGAGACC
ATCAAGTCGC TCAACGACGG CGAACTGATC GAGCTCGGCC GTAACCTCAG CCATGGTGTC
CCGATCGCCA CGCCGGTGTT CGACGGCGCC AAGGAGGCGG ACATCGAGGA GATGCTGAAG
CTCGCGGGCT TCGACGCCTC CGGCCAGTCG ACCGTCTATG ACGGCCGCAC CGGCGACGAG
TTCGATCGCA AGGTCACGGT CGGCTACATC TACATGCTGA AGCTGCATCA CCTCGTGGAC
GACAAGATCC ACGCCCGGTC GATCGGTCCG TACTCGCTCG TCACCCAGCA ACCGCTGGGC
GGCAAGGCGC AGTTCGGCGG CCAGCGCTTC GGCGAAATGG AGGTGTGGGC GCTCGAAGCC
TACGGCGCCG CCTACACGCT GCAGGAAATG CTGACGGTGA AGTCCGACGA CGTCGCCGGC
CGCACCAAGG TGTACGAAGC GATCGTGCGC GGCGACGACA CGTTCGAGGC CGGTATTCCG
GAATCGTTCA ACGTGCTCGT GAAGGAAATG CGCTCGCTCG GCCTCAACGT CGACCTGCAC
AACTCCAAGC TGGGCGTGCC GCCCCCGGCC GAGGCGGCCG AGTAA
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| Protein sequence | MAQQTFTGRK RVRKFFGHIR EVAEMPNLIE VQKASYDQFL MVAEPPGGRD DEGLQAVFRS
VFPISDFSNA SMLEFVRYEF EPPKYDVDEC RQRGMTYAAP LKVTLRLIVF DIDEETGARS
VKDIKEQDVY MGDIPLMTMN GTFVVNGTER VIVSQMHRSP GVFFDHDKGK THSSGKLLFA
ARVIPYRGSW LDIEFDAKDI VFARIDRRRK IPVTSLMFAL GLDGEEILST FYKKILYKRI
KEGWRVPFDA NRFRGYSTVN DLIDADTGKV VLEAGKKLTV RAARQLQEKG LKALRLSDEE
LVGNYLAEDL VNPKTGEIYA EAGEEITEKS LKALNEEGYK ELPLLDIDHV NIGPYIRNTL
SADKNMTRED ALFDIYRVMR PGEPPTLDSA QNMFQSLFFD SERYDLSAVG RVKMNMRLDL
DAPDTHRTLR KEDILAVIKT LVGLRDGKGE IDDIDHLGNR RVRSVGELME NQYRIGLLRM
ERAIKERMSS VDIDTVMPQD LINAKPAAAA VREFFGSSQL SQFMDQTNPL SEITHKRRLS
ALGPGGLTRE RAGFEVRDVH PTHYGRICPI ETPEGPNIGL INSLATFARV NKYGFVETPY
RKVKEGRVTD EVVYLSAMEE GRYAVAQANI SLDAKGRFTD DLIVCRAGGT RDVVLIPADQ
VDYMDVSPKQ LVSVAAALIP FLENDDANRA LMGSNMQRQA VPLVRAEAPF VGTGMEGVVA
RDSGAAIAAR RTGVIDQIDA TRIVIRATED LDPTKSGVDI YRLMKYQRSN QSTCINQRPL
VKVGDSVAKG DIIADGPSTD LGELALGRNV LVAFMPWNGY NFEDSILLSE RIVKEDVFTS
IHIEEFEVMA RDTKLGPEEI TRDIPNVSEE ALKNLDEAGI VYIGAEVRAG DILVGKITPK
GESPMTPEEK LLRAIFGEKA SDVRDTSLRV PPGVQGTIVE VRVFNRHGVD KDERALAIER
EEIERLAKDR DDEQAILDRN VYGRLADLLD NRQGVSGPKG FKKDTKITRA VLEEYPKSQW
WLFAAPNDKL MAEIEAMRKQ YDESKKGLEQ RFLDKVEKLQ RGDELPPGVM KMVKVFVAVK
RKIQPGDKMA GRHGNKGVVS KIVPIEDMPF LEDGTHADIV LNPLGVPSRM NVGQILETHL
GWACAGMGKK IGQTIDAYYQ RQDLKPLRET LKKIYGDDET IKSLNDGELI ELGRNLSHGV
PIATPVFDGA KEADIEEMLK LAGFDASGQS TVYDGRTGDE FDRKVTVGYI YMLKLHHLVD
DKIHARSIGP YSLVTQQPLG GKAQFGGQRF GEMEVWALEA YGAAYTLQEM LTVKSDDVAG
RTKVYEAIVR GDDTFEAGIP ESFNVLVKEM RSLGLNVDLH NSKLGVPPPA EAAE
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