Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3104 |
Symbol | |
ID | 4023609 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 3449580 |
End bp | 3450344 |
Gene Length | 765 bp |
Protein Length | 254 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637963305 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_570231 |
Protein GI | 91977572 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0244002 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACATCA GCAATCGCGT CGTCCTGGTC ACCGGCGCCG CCTCCGGCCT CGGCGCCGCC ACCGCCCGCA GCCTCGTCGC CGCGGGCGCC AAGGTGGTCG GCCTCGACCT CAATGCCGCC GCCGGCGCCG TGCTCGAAGC CGACCTCGGC GGCAGCTTCC GCTTCCTCAC CACCGACGTC ACCAAGGAAG AAGACGGCCA GGCGGCGGTG AAGCTGGCGC AGGAGCTCGG CCAGCTTTCC GGCCTGGTCA ATTGCGCCGG CATCGCCCCC GGCGAAAAGG TGGTCGGCCG CAAGGGCCCG CATCAGCTCG CCAGCTTCGC CCGCGCCATC TCGATCAATC TGGTCGGCAC CTTCAATATG ATCCGGCTCG CCGCCGAGGC GATGATCCAG CAGCCGGCGA ATGATCAGGG CGAACGCGGC GTGATCATCA ACACCGCCTC GGTAGCGGCG TTCGACGGCC AGATCGGCCA GGCCGCCTAC TCCGCCTCCA AGGGCGGCGT TGCGGCGATG ACGCTGCCGG TGGCGCGCGA ACTGGCGCAG CACGGCATCC GCGTCGTCAC CATCGCGCCG GGCATTTTCG AGACGCCGAT GATGGCGGGA ATGCCGCAGG AGGTGCAGGA TGCGCTCGGC AAGAGCGTGC CGTTCCCGCC GCGCCTCGGC CGGCCGTCGG AATATGCCGA TCTGGTGCAG CACATCATCG CCAATACCAT GTTGAATGGC GAGGTGATCC GCCTCGACGG CGCGCTGCGC ATGGCTCCGC GCTGA
|
Protein sequence | MNISNRVVLV TGAASGLGAA TARSLVAAGA KVVGLDLNAA AGAVLEADLG GSFRFLTTDV TKEEDGQAAV KLAQELGQLS GLVNCAGIAP GEKVVGRKGP HQLASFARAI SINLVGTFNM IRLAAEAMIQ QPANDQGERG VIINTASVAA FDGQIGQAAY SASKGGVAAM TLPVARELAQ HGIRVVTIAP GIFETPMMAG MPQEVQDALG KSVPFPPRLG RPSEYADLVQ HIIANTMLNG EVIRLDGALR MAPR
|
| |