| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3058 |
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| Symbol | |
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| ID | 4023561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 3405827 |
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| End bp | 3407563 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637963257 |
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| Product | Serine-type D-Ala-D-Ala carboxypeptidase |
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| Protein accession | YP_570185 |
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| Protein GI | 91977526 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1686] D-alanyl-D-alanine carboxypeptidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.522161 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACCGCA ACACCTCTGT TAGCTCGCGG ACCTTGCGAG TGTGCGTACT CGGCCTGGCC
ACCATTACGG CCGCGGTTAT CGCCACCACC GATACGGCCG ACGCGCGGCG AAAACATCGC
CACCACTCCC GTCATCACGT CGAGCGCAAC AGCTACAATC CCGCGTTCGC CTCGATCATC
GTCGACGCCA ACACCGGCGC CACGCTGACT GCGACCAATC CCGACGCGCT GCGCCACCCC
GCGTCGCTCA CCAAGATCAT GACGCTCTAT ATGCTGTTCG AGCGCCTGGA ACAGGGCAAG
CTCCAGCTCG ACAGCGAGAT GGAAGTCTCC GAACACGCCT CGTCGCAGGC CCCGACCAAG
CTCGGCTTGC GTCCCGGCCA GAGCTTGCGC GTCGAAGACG CGATCAAGGG CCTGGTCACC
CGCTCGGCCA ACGACGCCGC CGTGGTGATC GCCGAGACGG TCGGCGGCAG CGAGACCGAC
TTCGCCAAGA TGATGACCCG CAAGGCGCGC GCGCTCGGCA TGTCCCGCAC CGTATATCGC
AATGCCTCGG GCCTGCCGAA CGATGACCAA GTGACGACGG CCCGCGATCA GTCGATCCTC
GGCCGCGCGA TCCAGGACCG GTTCCCGCGC TATTACCGTT ACTTCGCGAC CGCCTCGTTC
AACTACCGCG GCAACTCGAT CCGAAACCAC AATCGCCTGC TCGGCAATGT CGAAGGCGTC
GACGGTATCA AGACCGGCTA CACCCGCGCC TCAGGCTTCA ATCTGGTCAC CTCGATGCAT
CGCGGCAACC GGTTCCTGGT CGGCGTGGTG CTGGGCGGCC GCAGCGGCGG TTCGCGCGAC
GCGATCATGC GCAATCTGCT CGCGGAAAAT CTCGAGAAAG CCTCGAACCG CCGCACCGTT
GCGGCGATCG TCGAGCGCAG CCCGTCGCAG ATCGATACCG ACGTCGCCAG CGATGATACC
CGGCAGGCGC CGACCGTCCA GGTACAGGGC GCCGTGCAGA TCGCCTCGGC CGAGCCGGAC
CCGGTCGAGC TGGCAGCCCG CCCCGCTCCG CCCGCCCCCG TCACCCGCGC GATCACCGCC
AGGCCGGAGA AACCCGAGCC CGGTCCGTTC AACAGCGGCA CCATCGACAC CAAGCCGCTG
GCGCTGGTCC CCGGCTCGTC GGAGCCGATG AAGCCGGTGC GGGTCAAGAC GGTTCAGGTC
AAGTCCGCGC CGATCAAACT TGCTTCCGCC GTCGCCGCGC CGCCGGTGAC CAATACCATC
CCGCCGCCGC GCCGCGACGT CGCCGAAACA TCCAGCGCTG CGGTCGCAAG GGCCGAATGG
ATCCAGCAGC CGGCGAACCA TGGCACCGGC AACGGCATCC TCGGCGTAAT GCCTGTCTCG
CGCGTGACGC CCTCGAACGC CCAGGCGATG GCCTCGGCTG AAGCTGCGCC CGCCGCCGCA
GCGCCGCCGG TCACCGTTCA GCAGAACGGT GCGATCAAGC CCGTCACGCA CAGCGGCTGG
ATCATCCAGG TCGGCGCGCT CGAGAGCGAG AGCGAAGCCA AAGCCCGGCT CGAAGCCGCC
CGCGATCAGG CCCGCGGCAT GTTGGGCAAG GCCGATCCGT TCACAGAGGC CGTCGTGTCC
AAGGGCGACC GCAAGCTGTA TCGCGCCCGT TTCGCCGGCC TCGAGCGCGA CGAAGCCGAA
GCGGTCTGCC GCAAGCTGAA GCGCTCCGAC ATCTCCTGCT TCACCATCAA GAACTAA
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| Protein sequence | MYRNTSVSSR TLRVCVLGLA TITAAVIATT DTADARRKHR HHSRHHVERN SYNPAFASII
VDANTGATLT ATNPDALRHP ASLTKIMTLY MLFERLEQGK LQLDSEMEVS EHASSQAPTK
LGLRPGQSLR VEDAIKGLVT RSANDAAVVI AETVGGSETD FAKMMTRKAR ALGMSRTVYR
NASGLPNDDQ VTTARDQSIL GRAIQDRFPR YYRYFATASF NYRGNSIRNH NRLLGNVEGV
DGIKTGYTRA SGFNLVTSMH RGNRFLVGVV LGGRSGGSRD AIMRNLLAEN LEKASNRRTV
AAIVERSPSQ IDTDVASDDT RQAPTVQVQG AVQIASAEPD PVELAARPAP PAPVTRAITA
RPEKPEPGPF NSGTIDTKPL ALVPGSSEPM KPVRVKTVQV KSAPIKLASA VAAPPVTNTI
PPPRRDVAET SSAAVARAEW IQQPANHGTG NGILGVMPVS RVTPSNAQAM ASAEAAPAAA
APPVTVQQNG AIKPVTHSGW IIQVGALESE SEAKARLEAA RDQARGMLGK ADPFTEAVVS
KGDRKLYRAR FAGLERDEAE AVCRKLKRSD ISCFTIKN
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