| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2893 |
|---|
| Symbol | clpX |
|---|
| ID | 4023393 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3222137 |
|---|
| End bp | 3223411 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637963093 |
|---|
| Product | ATP-dependent protease ATP-binding subunit ClpX |
|---|
| Protein accession | YP_570022 |
|---|
| Protein GI | 91977363 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.313162 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.205754 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAGG TCGGTACGAG CGACTCCAAG AACACCCTGT ACTGCTCGTT CTGCGGAAAG
AGCCAGCACG AGGTCCGCAA GCTGATCGCC GGCCCCACGG TATTCATCTG TGATGAATGC
GTGGAACTGT GCATGGACAT CATCCGCGAA GAGAACAAAT CTTCGCTGGT GAAGTCGCGC
GACGGCATCC CGACCCCGAA GGAGATCTGC AAGGTCCTCG ACGATTATGT GATCGGCCAG
GGCCATGCGA AGAAGGTGCT CTCGGTCGCG GTGCACAACC ACTACAAGCG GCTGAATCAC
CAGACCAAGC ACAACGACGT CGAGCTCGCG AAGTCGAACA TCCTGCTGAT CGGTCCGACC
GGCTCGGGCA AGACGCTGCT GGCGCAGACG CTGGCGCGGA TTCTCGACGT GCCGTTCACG
ATGGCGGATG CGACGACGCT GACCGAAGCC GGCTATGTCG GCGAGGATGT CGAGAACATC
ATTCTGAAGC TGCTGCAGGC TGCCGACTAC AACGTCGAGC GGGCGCAGCG CGGTATCGTC
TATATCGACG AAATCGACAA GATTTCGCGC AAGTCGGACA ATCCCTCGAT CACCCGCGAC
GTGTCGGGCG AGGGCGTCCA GCAGGCGCTG CTGAAGATCA TGGAAGGCAC GGTGGCTTCG
GTCCCGCCGC AGGGCGGCCG CAAGCATCCG CAGCAGGAGT TCCTGCAGGT CGACACCACC
AACATTCTGT TCATCTGCGG TGGTGCGTTC GCGGGCCTTG AAAAGATCAT CTCGGCGCGC
GGCCGTTCGA CCTCGATCGG CTTCGCGGCG CAGGTGCTCG CGCCTGAAGA TCGCCGCACC
GGCGAAATCT TCCGTCACGT CGAGCCGGAA GACTTGCTGA AGTACGGCCT GATCCCGGAA
TTCGTCGGCC GTCTGCCCGT CGTGGCGACG CTCGAGGATC TCGATGAGGC CTCGCTGAAG
AAGATCCTGA CCGACCCGAA GAACGCGCTG GTCAAGCAGT ATCAGCGGCT GTTCGAAATG
GAGAACATCG AACTCACCTT CGCCGACGAG GCGCTTGGTG CGGTGGCGCG CAAGGCGATC
GAGCGCAAGA CCGGCGCCCG CGGCCTGCGG TCGATTCTGG AGAGCATTCT GCTCGAGACG
ATGTTCGATC TGCCGGGTCT CGAAGGCGTC GAGGAAGTTG TGATCTCGCG CGAAGTCGTC
GATGGAACAG CGCGTCCGCT CTACATTTAT GCCGACCGTT CAGACCGGGC GGCGGAGAGC
AGCGCCAGCG CGTAA
|
|---|
| Protein sequence | MSKVGTSDSK NTLYCSFCGK SQHEVRKLIA GPTVFICDEC VELCMDIIRE ENKSSLVKSR
DGIPTPKEIC KVLDDYVIGQ GHAKKVLSVA VHNHYKRLNH QTKHNDVELA KSNILLIGPT
GSGKTLLAQT LARILDVPFT MADATTLTEA GYVGEDVENI ILKLLQAADY NVERAQRGIV
YIDEIDKISR KSDNPSITRD VSGEGVQQAL LKIMEGTVAS VPPQGGRKHP QQEFLQVDTT
NILFICGGAF AGLEKIISAR GRSTSIGFAA QVLAPEDRRT GEIFRHVEPE DLLKYGLIPE
FVGRLPVVAT LEDLDEASLK KILTDPKNAL VKQYQRLFEM ENIELTFADE ALGAVARKAI
ERKTGARGLR SILESILLET MFDLPGLEGV EEVVISREVV DGTARPLYIY ADRSDRAAES
SASA
|
|---|
| |