Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_2642 |
Symbol | smpB |
ID | 4023139 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 2960001 |
End bp | 2960474 |
Gene Length | 474 bp |
Protein Length | 157 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637962840 |
Product | SsrA-binding protein |
Protein accession | YP_569772 |
Protein GI | 91977113 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0691] tmRNA-binding protein |
TIGRFAM ID | [TIGR00086] SsrA-binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.122546 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0029074 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCCGACA AGAACGAACG CGCGATCAAA GTGGTCGCGG AGAACCGCAA GGCGCGGTTC AACTACGCAA TCGAAGACAC GATCGAGGCG GGCATCTCGC TGACCGGCAC CGAGGTCAAG TCGGTCCGCA GCGGCAAGTC GACGATCGCC GAATCCTATG CGGATTCCCG CGGCGGGGAG ATCTGGCTGA TCAATGCCAA TATCCCGGAA TATCTGCAGG CCAACCGCTT CAACCACGAG CCAAAGCGGC CGCGCAAGCT GCTGCTGCAC CGAAAGCAGA TCAACAAGCT GATGGGCGCG GTCGAGCGTC AGGGTATGAC TCTCATTCCG CTGAAGCTGT ACTTCAACGA GAAGGGCCGC GCCAAGTTGC TGCTGGCGCT GGCCAAGGGC AAGCAGCTGC ACGACAAGCG GGAAACCGAA AAGAAGCGCG ACTGGAGTCG CGAGAAAGGC CGGCTGTTGC GCGCGCGCGG CTGA
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Protein sequence | MADKNERAIK VVAENRKARF NYAIEDTIEA GISLTGTEVK SVRSGKSTIA ESYADSRGGE IWLINANIPE YLQANRFNHE PKRPRKLLLH RKQINKLMGA VERQGMTLIP LKLYFNEKGR AKLLLALAKG KQLHDKRETE KKRDWSREKG RLLRARG
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